Evidence map›Paper›PMID 25746993›Full record

ArticleApplied and environmental microbiology2015

Accumulation of d-glucose from pentoses by metabolically engineered Escherichia coli.

Tian Xia, Qi Han, William V Costanzo, Yixuan Zhu, Jeffrey L Urbauer, Mark A Eiteman

Abstract read
In one paragraph

Article in Applied and environmental microbiology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Tian XiaBioChemical Engineering, College of Engineering, University of Georgia, Athens, Georgia, USA.
Qi HanBioChemical Engineering, College of Engineering, University of Georgia, Athens, Georgia, USA.
William V CostanzoBioChemical Engineering, College of Engineering, University of Georgia, Athens, Georgia, USA.
Yixuan ZhuBioChemical Engineering, College of Engineering, University of Georgia, Athens, Georgia, USA.
Jeffrey L UrbauerDepartment of Chemistry, University of Georgia, Athens, Georgia, USA.
Mark A EitemanBioChemical Engineering, College of Engineering, University of Georgia, Athens, Georgia, USA eiteman@engr.uga.edu.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Escherichia coli that is unable to metabolize d-glucose (with knockouts in ptsG, manZ, and glk) accumulates a small amount of d-glucose (yield of about 0.01 g/g) during growth on the pentoses d-xylose or l-arabinose as a sole carbon source. Additional knockouts in the zwf and pfkA genes, encoding, respectively, d-glucose-6-phosphate 1-dehydrogenase and 6-phosphofructokinase I (E. coli MEC143), increased accumulation to greater than 1 g/liter d-glucose and 100 mg/liter d-mannose from 5 g/liter d-xylose or l-arabinose. Knockouts of other genes associated with interconversions of d-glucose-phosphates demonstrate that d-glucose is formed primarily by the dephosphorylation of d-glucose-6-phosphate. Under controlled batch conditions with 20 g/liter d-xylose, MEC143 generated 4.4 g/liter d-glucose and 0.6 g/liter d-mannose. The results establish a direct link between pentoses and hexoses and provide a novel strategy to increase carbon backbone length from five to six carbons by directing flux through the pentose phosphate pathway.

Indexed as

ArabinoseEscherichia coliEscherichia coli ProteinsFermentationGlucoseGlucosephosphate DehydrogenaseMannoseMetabolic EngineeringPentose Phosphate PathwayPhosphofructokinase-1XyloseArabinoseEscherichia coli ProteinsGlucoseGlucosephosphate DehydrogenaseMannosePhosphofructokinase-1Xylose

Identifiers

PMID25746993
PMCPMC4407232

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.