Evidence map›Paper›PMID 25746451›Full record

ArticleBehavioural brain research2015

Hippocampal increase of 5-hmC in the glucocorticoid receptor gene following acute stress.

Sisi Li, Ligia A Papale, Douglas B Kintner, Grzegorz Sabat, Gregory A Barrett-Wilt, Pelin Cengiz, Reid S Alisch

Abstract read
In one paragraph

Article in Behavioural brain research, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 29 citations in OpenAlex.

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  10. The potential of epigenetics in stress-enhanced fear learning models of PTSD.Learning & memory (Cold Spring Harbor, N.Y.) · 2016
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Sisi Li *Neuroscience training program, Departments of, University of Wisconsin, Madison, WI, USA.
Ligia A Papale *Department of Psychiatry, University of Wisconsin, Madison, WI, USA.
Douglas B KintnerDepartment of Pediatrics, University of Wisconsin, Madison, WI, USA.
Grzegorz SabatBiotechnology Center, University of Wisconsin, Madison, WI, USA.
Gregory A Barrett-WiltBiotechnology Center, University of Wisconsin, Madison, WI, USA.
Pelin CengizDepartment of Pediatrics, University of Wisconsin, Madison, WI, USA.
Reid S AlischDepartment of Psychiatry, University of Wisconsin, Madison, WI, USA.
University of Wisconsin–Madison · USUniversity of Wisconsin System · US

Funding

Institutional Clinical and Translational Science AwardUL1TR000427 · NCATS · UNIVERSITY OF WISCONSIN-MADISON · PI DREZNER, MARC KENNETH · 2012 to 2016
$32.2M
WISCONSIN CENTER ON MENTAL RETARDATION: CORE SUPPORTP30HD003352 · NICHD · UNIVERSITY OF WISCONSIN-MADISON · PI SVAREN, JOHN P · 1985 to 2015
$25.2M
NEUROSCIENCE TRAINING PROGRAMT32GM007507 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI HALLORAN, MARY C · 1985 to 2017
$9.3M
Institutional Clinical and Translational Science AwardKL2TR000428 · NCATS · UNIVERSITY OF WISCONSIN-MADISON · PI DREZNER, MARC KENNETH · 2012 to 2016
$6.2M
Waisman Intellectual and Developmental Disabilities Research Center Down Syndrome RegistryU54HD090256 · NICHD · UNIVERSITY OF WISCONSIN-MADISON · PI CHANG, QIANG · 2016 to 2020
$6.0M
NCATS NIH HHS KL2 TR000428NCATS NIH HHS UL1TR0000427NCATS NIH HHS UL1 TR000427NCATS NIH HHS UL1TR000427NICHD NIH HHS P30 HD003352NICHD NIH HHS P30 HD03352NICHD NIH HHS U54 HD090256NIGMS NIH HHS T32 GM007507NIGMS NIH HHS T32-GM007507
6 · The paper itself

Abstract

5-Hydroxymethylcytosine (5-hmC) is a novel environmentally sensitive DNA modification that is highly enriched in post-mitotic neurons and is associated with active transcription of neuronal genes. Recently, 5-hmC was functionally linked to learning and cognition and these studies revealed an accumulation of 5-hmC in the prefrontal cortex of mice undergoing fear extinction. These studies led us to hypothesize a role for 5-hmC in response to stress. To test this hypothesis, we combined immunohistochemistry, tandem mass spectrometry, and tet-assisted sodium bisulfite sequencing (TAB-seq) analyses on tissue and DNA from the hippocampus of 7-week old male mice exposed to a single 30-min restraint stress. After first identifying that the broad neuronal distribution of 5-hmC is not disrupted by acute stress, we used TAB-seq to find a stress-induced increase of 5-hmC in the 3'UTR of the glucocorticoid receptor gene (Nr3c1). Nr3c1 has a well-defined role in the stress pathway and these data suggest that 5-hmC contributes to these processes. Together, these data indicate that a deeper investigation of stress-related 5-hmC levels may reveal an environmental impact on this newly discovered epigenetic mark in the brain.

Indexed as

3' Untranslated Regions5-MethylcytosineAcute DiseaseAnimalsCytosineDisease Models, AnimalHippocampusMiceNeuronsRandom AllocationReceptors, GlucocorticoidRestraint, PhysicalStress, Psychological3' Untranslated Regions5-hydroxymethylcytosine5-MethylcytosineCytosineNR3C1 protein, mouseReceptors, Glucocorticoid5-hmCAcute stressDNA methylationEpigenetics

Identifiers

PMID25746451
PMCPMC4398338
OpenAlexW2054177937

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.