ArticlePloS one2015
Genome-wide analysis of homeobox gene family in legumes: identification, gene duplication and expression profiling.
Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.
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Who cites it
30 citing papers in PubMed, 61 citations in OpenAlex.
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- An integrated transcriptome mapping the regulatory network of coding and long non-coding RNAs provides a genomics resource in chickpea.Communications biology · 2022Article
- Genome-wide identification, in silico characterization and expression analysis of the RNA helicase gene family in chickpea (C. arietinum L.).Scientific reports · 2022Article
- The Roles of BLH Transcription Factors in Plant Development and Environmental Response.International journal of molecular sciences · 2022Review
- Genome-wide identification and expression analysis of the3 Biotech · 2022Article
- Genome-wide investigation of the ZF-HD gene family in two varieties of alfalfa (Medicago sativa L.) and its expression pattern under alkaline stress.BMC genomics · 2022Article
- Microevolution, speciation and macroevolution in rhizobia: Genomic mechanisms and selective patterns.Frontiers in plant science · 2022Review
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- Genome-Wide Analysis of the Homeobox Gene Family and Identification of Drought-Responsive Members inPlants (Basel, Switzerland) · 2021Article
- Genome-wide identification of ZF-HD gene family in Triticum aestivum: Molecular evolution mechanism and function analysis.PloS one · 2021Article
- Genome-Wide DNA Methylation Analysis of SoybeanFrontiers in plant science · 2020Article
- Identification of Homeobox Genes Associated with Lignification and Their Expression Patterns in Bamboo Shoots.Biomolecules · 2019Article
- The grapevine homeobox gene VvHB58 influences seed and fruit development through multiple hormonal signaling pathways.BMC plant biology · 2019Article
- Genomic Organization of the B3-Domain Transcription Factor Family in Grapevine (International journal of molecular sciences · 2019Article
- A comprehensive analysis of the B3 superfamily identifies tissue-specific and stress-responsive genes in chickpea (3 Biotech · 2019Article
- Genome-wide identification of GRF transcription factors in soybean and expression analysis of GmGRF family under shade stress.BMC plant biology · 2019Article
- A siphonous macroalgal genome suggests convergent functions of homeobox genes in algae and land plants.DNA research : an international journal for rapid publication of reports on genes and genomes · 2019Article
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Authors and funding
4 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Homeobox genes encode transcription factors that are known to play a major role in different aspects of plant growth and development. In the present study, we identified homeobox genes belonging to 14 different classes in five legume species, including chickpea, soybean, Medicago, Lotus and pigeonpea. The characteristic differences within homeodomain sequences among various classes of homeobox gene family were quite evident. Genome-wide expression analysis using publicly available datasets (RNA-seq and microarray) indicated that homeobox genes are differentially expressed in various tissues/developmental stages and under stress conditions in different legumes. We validated the differential expression of selected chickpea homeobox genes via quantitative reverse transcription polymerase chain reaction. Genome duplication analysis in soybean indicated that segmental duplication has significantly contributed in the expansion of homeobox gene family. The Ka/Ks ratio of duplicated homeobox genes in soybean showed that several members of this family have undergone purifying selection. Moreover, expression profiling indicated that duplicated genes might have been retained due to sub-functionalization. The genome-wide identification and comprehensive gene expression profiling of homeobox gene family members in legumes will provide opportunities for functional analysis to unravel their exact role in plant growth and development.
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