Evidence map›Paper›PMID 25744998›Full record

ArticleGenome announcements2015

Complete Genome Sequence of the Opitutaceae Bacterium Strain TAV5, a Potential Facultative Methylotroph of the Wood-Feeding Termite Reticulitermes flavipes.

Malini Kotak, Jantiya Isanapong, Lynne Goodwin, David Bruce, Amy Chen, Cliff S Han, Marcel Huntemann, Natalia Ivanova, Miriam L Land, Matt Nolan and 3 more

Open access · diamondAbstract read
In one paragraph

Article in Genome announcements, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.7field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 22 citations in OpenAlex.

  1. Article
  2. Article
  3. Crystal structure of a homotrimeric verrucomicrobialJournal of structural biology: X · 2021
    Article
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  5. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 6 institutions in 2 countries.

Malini KotakDepartment of Biology, University of Texas, Arlington, Texas, USA.
Jantiya IsanapongKing Mongkut's University of Technology North Bangkok, Bangkok, Thailand.
Lynne GoodwinLos Alamos National Laboratory, Los Alamos, New Mexico, USA.
David BruceLos Alamos National Laboratory, Los Alamos, New Mexico, USA.
Amy ChenDOE Joint Genome Institute, Walnut Creek, California, USA.
Cliff S HanLos Alamos National Laboratory, Los Alamos, New Mexico, USA.
Marcel HuntemannDOE Joint Genome Institute, Walnut Creek, California, USA.
Natalia IvanovaDOE Joint Genome Institute, Walnut Creek, California, USA.
Miriam L LandOak Ridge National Laboratory, Oak Ridge, Tennessee, USA.
Matt NolanDOE Joint Genome Institute, Walnut Creek, California, USA.
Amrita PatiDOE Joint Genome Institute, Walnut Creek, California, USA.
Tanja WoykeDOE Joint Genome Institute, Walnut Creek, California, USA.
Jorge L M RodriguesDepartment of Land, Water and Air Resources, University of California-Davis, Davis, California, USA jmrodrigues@ucdavis.edu.
Joint Genome Institute · USLos Alamos National Laboratory · USKing Mongkut's University of Technology North Bangkok · THOak Ridge National Laboratory · USThe University of Texas at Arlington · USUniversity of California, Davis · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The Opitutaceae bacterium strain TAV5, a member of the phylum Verrucomicrobia, was isolated from the wood-feeding termite hindgut. We report here its complete genome sequence, which contains a chromosome and a plasmid of 7,317,842 bp and 99,831 bp, respectively. The genomic analysis reveals genes for methylotrophy, lignocellulose degradation, and ammonia and sulfate assimilation.

Identifiers

PMID25744998
PMCPMC4358385
OpenAlexW2053125692

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.