Evidence map›Paper›PMID 25744984›Full record

ArticleGenome announcements2015

Draft Genome Sequence of the Terrestrial Cyanobacterium Scytonema millei VB511283, Isolated from Eastern India.

Diya Sen, Mathu Malar Chandrababunaidu, Deeksha Singh, Neha Sanghi, Arpita Ghorai, Gyan Prakash Mishra, Madhavi Madduluri, Siba Prasad Adhikary, Sucheta Tripathy

Abstract read
In one paragraph

Article in Genome announcements, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Genome sequencing of the NIES Cyanobacteria collection with a focus on the heterocyst-forming clade.DNA research : an international journal for rapid publication of reports on genes and genomes · 2021
    Article
  2. Review
  3. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Diya SenStructural Biology and Bioinformatics Division, Council of Scientific and Industrial Research, Indian Institute of Chemical Biology, Kolkata, West Bengal, India.
Mathu Malar ChandrababunaiduStructural Biology and Bioinformatics Division, Council of Scientific and Industrial Research, Indian Institute of Chemical Biology, Kolkata, West Bengal, India.
Deeksha SinghStructural Biology and Bioinformatics Division, Council of Scientific and Industrial Research, Indian Institute of Chemical Biology, Kolkata, West Bengal, India.
Neha SanghiStructural Biology and Bioinformatics Division, Council of Scientific and Industrial Research, Indian Institute of Chemical Biology, Kolkata, West Bengal, India.
Arpita GhoraiStructural Biology and Bioinformatics Division, Council of Scientific and Industrial Research, Indian Institute of Chemical Biology, Kolkata, West Bengal, India.
Gyan Prakash MishraStructural Biology and Bioinformatics Division, Council of Scientific and Industrial Research, Indian Institute of Chemical Biology, Kolkata, West Bengal, India.
Madhavi MadduluriStructural Biology and Bioinformatics Division, Council of Scientific and Industrial Research, Indian Institute of Chemical Biology, Kolkata, West Bengal, India.
Siba Prasad AdhikaryFakir Mohan University, Vyasa Vihar, Nuapadhi, Balasore, Odisha, India adhikarysp@gmail.com tsucheta@gmail.com.
Sucheta TripathyStructural Biology and Bioinformatics Division, Council of Scientific and Industrial Research, Indian Institute of Chemical Biology, Kolkata, West Bengal, India adhikarysp@gmail.com tsucheta@gmail.com.ORCID http://orcid.org/0000-0003-0611-8088

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We report here the draft genome sequence of Scytonema millei VB511283, a cyanobacterium isolated from biofilms on the exterior of stone monuments in Santiniketan, eastern India. The draft genome is 11,627,246 bp long (11.63 Mb), with 118 scaffolds. About 9,011 protein-coding genes, 117 tRNAs, and 12 rRNAs are predicted from this assembly.

Identifiers

PMID25744984
PMCPMC4358371

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.