Evidence map›Paper›PMID 25744723›Full record

ArticleCancer research2015

Molecular portraits of epithelial, mesenchymal, and hybrid States in lung adenocarcinoma and their relevance to survival.

Mark J Schliekelman, Ayumu Taguchi, Jun Zhu, Xudong Dai, Jaime Rodriguez, Muge Celiktas, Qing Zhang, Alice Chin, Chee-Hong Wong, Hong Wang and 12 more

Open access · greenAbstract read
In one paragraph

Article in Cancer research, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 136 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
136citing papers in PubMed, 1 pooled it
11.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

136 citing papers in PubMed, 1 synthesis or guideline pooled it, 218 citations in OpenAlex.

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76 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors at 6 institutions in 2 countries.

Mark J SchliekelmanDivision of Public Health Sciences, Fred Hutchinson Cancer Research Center, Seattle, Washington.
Ayumu TaguchiDepartment of Translational Molecular Pathology, The University of Texas MD Anderson Cancer Center, Houston, Texas.
Jun ZhuDepartment of Genetics and Genomic Sciences, Institute of Genomics and Multiscale Biology, Mount Sinai School of Medicine, New York, New York.
Xudong DaiDepartment of Genetics and Genomic Sciences, Institute of Genomics and Multiscale Biology, Mount Sinai School of Medicine, New York, New York.
Jaime RodriguezDepartment of Translational Molecular Pathology, The University of Texas MD Anderson Cancer Center, Houston, Texas.
Muge CeliktasDepartment of Clinical Cancer Prevention, The University of Texas MD Anderson Cancer Center, Houston, Texas.
Qing ZhangDivision of Public Health Sciences, Fred Hutchinson Cancer Research Center, Seattle, Washington.
Alice ChinDivision of Public Health Sciences, Fred Hutchinson Cancer Research Center, Seattle, Washington.
Chee-Hong WongDivision of Public Health Sciences, Fred Hutchinson Cancer Research Center, Seattle, Washington.
Hong WangDepartment of Clinical Cancer Prevention, The University of Texas MD Anderson Cancer Center, Houston, Texas.
Lisa McFerrinDivision of Public Health Sciences, Fred Hutchinson Cancer Research Center, Seattle, Washington.
Suhaida A SelamatDepartment of Surgery, Biochemistry and Molecular Biology, Norris Cancer Center, Keck School of Medicine, University of Southern California, Los Angeles, California.
Chenchen YangDepartment of Surgery, Biochemistry and Molecular Biology, Norris Cancer Center, Keck School of Medicine, University of Southern California, Los Angeles, California.
Evan M KrohDivision of Public Health Sciences, Fred Hutchinson Cancer Research Center, Seattle, Washington.
Kavita S GargDivision of Public Health Sciences, Fred Hutchinson Cancer Research Center, Seattle, Washington.
Carmen BehrensDepartment of Thoracic/Head and Neck Medical Oncology, The University of Texas MD Anderson Cancer Center, Houston, Texas.
Adi F GazdarHamon Center for Therapeutic Oncology Research, Department of Pathology, University of Texas Southwestern Medical Center, Dallas, Texas.
Ite A Laird-OffringaDepartment of Surgery, Biochemistry and Molecular Biology, Norris Cancer Center, Keck School of Medicine, University of Southern California, Los Angeles, California.
Muneesh TewariDivision of Public Health Sciences, Fred Hutchinson Cancer Research Center, Seattle, Washington. Division of Clinical Research, Fred Hutchinson Cancer Research Center, Seattle, Washington. Division of Human Biology, Fred Hutchinson Cancer Research Center, Seattle, Washington.
Ignacio I WistubaDepartment of Translational Molecular Pathology, The University of Texas MD Anderson Cancer Center, Houston, Texas.
Jean P ThieryInstitute of Molecular Cell Biology, Singapore. Department of Biochemistry, Yong Loo Lin School of Medicine, National University of Singapore, Singapore.
Samir M HanashDepartment of Clinical Cancer Prevention, The University of Texas MD Anderson Cancer Center, Houston, Texas. shanash@mdanderson.org.
Fred Hutch Cancer Center · USThe University of Texas MD Anderson Cancer Center · USUniversity of Southern California · USIcahn School of Medicine at Mount Sinai · USNational University of Singapore · SGThe University of Texas Southwestern Medical Center · US

Funding

Tumor Evolution and Metastasis ProgramP30CA016672 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI Scott Kopetz · 1985 to 2026
$290.8M
UNIVERSITY OF TEXAS--SPORE IN LUNG CANCERP50CA070907 · NCI · UT SOUTHWESTERN MEDICAL CENTER · PI GIBBONS, DON LYNN · 1996 to 2024
$57.4M
LOW-MOLECULAR WEIGHT LIGANDS FOR PROSTATE CANCERR33CA088245 · NCI · BETH ISRAEL DEACONESS MEDICAL CENTER · PI FRANGIONI, JOHN V · 2002 to 2003
$1.5M
LOW-MOLECULAR WEIGHT LIGANDS FOR PROSTATE CANCERR21CA088245 · NCI · BETH ISRAEL DEACONESS MEDICAL CENTER · PI FRANGIONI, JOHN V · 2000 to 2001
$328k
NCI NIH HHS P30 CA016672NCI NIH HHS P50 CA070907NCI NIH HHS R21 CA088245NCI NIH HHS R21/R33 CA-88245NCI NIH HHS R33 CA088245
6 · The paper itself

Abstract

Epithelial-to-mesenchymal transition (EMT) is a key process associated with tumor progression and metastasis. To define molecular features associated with EMT states, we undertook an integrative approach combining mRNA, miRNA, DNA methylation, and proteomic profiles of 38 cell populations representative of the genomic heterogeneity in lung adenocarcinoma. The resulting data were integrated with functional profiles consisting of cell invasiveness, adhesion, and motility. A subset of cell lines that were readily defined as epithelial or mesenchymal based on their morphology and E-cadherin and vimentin expression elicited distinctive molecular signatures. Other cell populations displayed intermediate/hybrid states of EMT, with mixed epithelial and mesenchymal characteristics. A dominant proteomic feature of aggressive hybrid cell lines was upregulation of cytoskeletal and actin-binding proteins, a signature shared with mesenchymal cell lines. Cytoskeletal reorganization preceded loss of E-cadherin in epithelial cells in which EMT was induced by TGFβ. A set of transcripts corresponding to the mesenchymal protein signature enriched in cytoskeletal proteins was found to be predictive of survival in independent datasets of lung adenocarcinomas. Our findings point to an association between cytoskeletal and actin-binding proteins, a mesenchymal or hybrid EMT phenotype and invasive properties of lung adenocarcinomas.

Indexed as

AdenocarcinomaAdenocarcinoma of LungCadherinsCell AdhesionCell Line, TumorCell MovementCell SurvivalCytoskeletonDNA MethylationEpithelial CellsEpithelial-Mesenchymal TransitionHumansLung NeoplasmsMicrofilament ProteinsMicroRNAsProteomicsCadherinsMicrofilament ProteinsMicroRNAsTransforming Growth Factor betaVimentin

Identifiers

PMID25744723
PMCPMC4846295
OpenAlexW2010292117

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.