Evidence map›Paper›PMID 25743702›Full record

ArticleNature communications2015

Genomic landscape of paediatric adrenocortical tumours.

Emilia M Pinto, Xiang Chen, John Easton, David Finkelstein, Zhifa Liu, Stanley Pounds, Carlos Rodriguez-Galindo, Troy C Lund, Elaine R Mardis, Richard K Wilson and 14 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 120 papers.

0numbers the graph read from it
0cells of the map it votes in
120citing papers in PubMed
19.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

120 citing papers in PubMed, 203 citations in OpenAlex.

  1. Trial
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  4. Trial
  5. Article
  6. Article
  7. Maternal methionine supplementation regulates skeletal muscle development through NAnimal nutrition (Zhongguo xu mu shou yi xue hui) · 2026
    Article
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  9. Article
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  11. Article
  12. Review
  13. Article
  14. Investigation of DNA Damage Response Genes Validates the Role of DNA Repair in Pediatric Cancer Risk and IdentifiesJournal of clinical oncology : official journal of the American Society of Clinical Oncology · 2025
    Article
  15. Article
  16. Article
  17. Adrenocortical stem cells in health and disease.Nature reviews. Endocrinology · 2025
    Review
  18. Article
  19. Article
  20. The landscape of structural variation in pediatric cancer.bioRxiv : the preprint server for biology · 2025
    Article

60 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

24 authors at 6 institutions in 2 countries.

Emilia M PintoDepartment of Biochemistry, St Jude Children's Research Hospital, Memphis, Tennessee 38105, USA.ORCID 000000015567000X
Xiang ChenDepartment of Computational Biology and Bioinformatics, St Jude Children's Research Hospital, Memphis, Tennessee 38105, USA.
John EastonDepartment of Computational Biology and Bioinformatics, St Jude Children's Research Hospital, Memphis, Tennessee 38105, USA.
David FinkelsteinDepartment of Computational Biology and Bioinformatics, St Jude Children's Research Hospital, Memphis, Tennessee 38105, USA.
Zhifa LiuDepartment of Biostatistics, St Jude Children's Research Hospital, Memphis, Tennessee 38105, USA.
Stanley PoundsDepartment of Biostatistics, St Jude Children's Research Hospital, Memphis, Tennessee 38105, USA.ORCID 0000000291672114
Carlos Rodriguez-GalindoDepartment of Pediatric Oncology, Dana-Farber/Boston Children's Cancer and Blood Disorders Center, Department of Pediatrics, Harvard Medical School, Boston, Massachusetts 02215, USA.
Troy C LundUniversity of Minnesota Medical School, Minneapolis, Minnesota 55455, USA.
Elaine R Mardis1] The Genome Institute, Washington University School of Medicine, St Louis, Missouri 63108, USA [2] Department of Genetics, Washington University School of Medicine, St Louis, Missouri 63108, USA [3] Department of Medicine, Washington University School of Medicine, St Louis, Missouri 63108, USA.
Richard K Wilson1] The Genome Institute, Washington University School of Medicine, St Louis, Missouri 63108, USA [2] Department of Genetics, Washington University School of Medicine, St Louis, Missouri 63108, USA [3] Department of Siteman Cancer Center, Washington University School of Medicine, St Louis, Missouri 63108, USA.
Kristy BoggsDepartment of Computational Biology and Bioinformatics, St Jude Children's Research Hospital, Memphis, Tennessee 38105, USA.
Donald YergeauDepartment of Computational Biology and Bioinformatics, St Jude Children's Research Hospital, Memphis, Tennessee 38105, USA.
Jinjun ChengDepartment of Computational Biology and Bioinformatics, St Jude Children's Research Hospital, Memphis, Tennessee 38105, USA.
Heather L MulderDepartment of Computational Biology and Bioinformatics, St Jude Children's Research Hospital, Memphis, Tennessee 38105, USA.
Jayanthi ManneDepartment of Computational Biology and Bioinformatics, St Jude Children's Research Hospital, Memphis, Tennessee 38105, USA.
Jesse JenkinsDepartment of Pathology, St Jude Children's Research Hospital, Memphis, Tennessee 38105, USA.
Maria J MastellaroBoldrini Children's Research Hospital, Campinas 13083-210, Brazil.
Bonald C FigueiredoInstituto de Pesquisa Pelé Pequeno Príncipe, Curitiba 80-250-200, Brazil.
Michael A DyerDepartment of Developmental Neurobiology, St Jude Children's Research Hospital, Memphis, Tennessee 38105, USA.
Alberto PappoDepartment of Oncology, St Jude Children's Research Hospital, Memphis, Tennessee 38105, USA.
Jinghui ZhangDepartment of Computational Biology and Bioinformatics, St Jude Children's Research Hospital, Memphis, Tennessee 38105, USA.
James R DowningDepartment of Pathology, St Jude Children's Research Hospital, Memphis, Tennessee 38105, USA.
Raul C RibeiroDepartment of Oncology, St Jude Children's Research Hospital, Memphis, Tennessee 38105, USA.
Gerard P ZambettiDepartment of Biochemistry, St Jude Children's Research Hospital, Memphis, Tennessee 38105, USA.
St. Jude Children's Research Hospital · USWashington University in St. Louis · USCentro Infantil Boldrini · BRHarvard University · USInstituto de Tecnologia do Paraná · BRUniversity of Minnesota Medical Center · US

Funding

Viral Vector Technology (VVTSR)P30CA021765 · NCI · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI CHARLES ROBERTS · 1985 to 2026
$166.9M
Proliferation Control in the Retina: The Rb FamilyR01EY014867 · NEI · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI DYER, MICHAEL A · 2003 to 2012
$4.5M
Proliferation and Differentiation of Retinal Stem CellsR01EY018599 · NEI · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI DYER, MICHAEL A · 2008 to 2011
$2.5M
Molecular Targeted Therapy for RetinoblastomaR01CA168875 · NCI · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI DYER, MICHAEL A · 2012 to 2016
$1.8M
Perivascular Cell Characterization and Contribution to the Hematopoietic NicheK08HL108998 · NHLBI · UNIVERSITY OF MINNESOTA · PI LUND, TROY C. · 2011 to 2015
$686k
Howard Hughes Medical InstituteNCI NIH HHS CA168875NCI NIH HHS CA21765NCI NIH HHS P30 CA021765NCI NIH HHS R01 CA168875NEI NIH HHS EY014867NEI NIH HHS EY018599NEI NIH HHS R01 EY014867NEI NIH HHS R01 EY018599NHLBI NIH HHS K08 HL108998
6 · The paper itself

Abstract

Paediatric adrenocortical carcinoma is a rare malignancy with poor prognosis. Here we analyse 37 adrenocortical tumours (ACTs) by whole-genome, whole-exome and/or transcriptome sequencing. Most cases (91%) show loss of heterozygosity (LOH) of chromosome 11p, with uniform selection against the maternal chromosome. IGF2 on chromosome 11p is overexpressed in 100% of the tumours. TP53 mutations and chromosome 17 LOH with selection against wild-type TP53 are observed in 28 ACTs (76%). Chromosomes 11p and 17 undergo copy-neutral LOH early during tumorigenesis, suggesting tumour-driver events. Additional genetic alterations include recurrent somatic mutations in ATRX and CTNNB1 and integration of human herpesvirus-6 in chromosome 11p. A dismal outcome is predicted by concomitant TP53 and ATRX mutations and associated genomic abnormalities, including massive structural variations and frequent background mutations. Collectively, these findings demonstrate the nature, timing and potential prognostic significance of key genetic alterations in paediatric ACT and outline a hypothetical model of paediatric adrenocortical tumorigenesis.

Indexed as

Adrenal Cortex NeoplasmsAdrenocortical CarcinomaBase Sequencebeta CateninChildChromosomes, Human, Pair 11Chromosomes, Human, Pair 17DNA HelicasesGene Expression ProfilingGene Expression Regulation, NeoplasticGenome, HumanHumansInsulin-Like Growth Factor IILoss of HeterozygosityMolecular Sequence DataNuclear ProteinsATRX protein, humanbeta CateninCTNNB1 protein, humanDNA HelicasesIGF2 protein, humanInsulin-Like Growth Factor IINuclear ProteinsTP53 protein, humanTumor Suppressor Protein p53X-linked Nuclear Protein

Identifiers

PMID25743702
PMCPMC4352712
OpenAlexW2090978506

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.