Evidence map›Paper›PMID 25743628›Full record

ArticleScientific reports2015

New potential eukaryotic substrates of the mycobacterial protein tyrosine phosphatase PtpA: hints of a bacterial modulation of macrophage bioenergetics state.

Mariana Margenat, Anne-Marie Labandera, Magdalena Gil, Federico Carrion, Marcela Purificação, Guilherme Razzera, María Magdalena Portela, Gonzalo Obal, Hernán Terenzi, Otto Pritsch and 3 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.1field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 22 citations in OpenAlex.

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  9. Identification of Novel Physiological Substrates ofMolecular & cellular proteomics : MCP · 2018
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 4 institutions in 3 countries.

Mariana MargenatSección Bioquímica y Biología Molecular, Facultad de Ciencias, Universidad de la República, Iguá 4225, CP 11400, Montevideo, Uruguay.
Anne-Marie LabanderaSección Bioquímica y Biología Molecular, Facultad de Ciencias, Universidad de la República, Iguá 4225, CP 11400, Montevideo, Uruguay.
Magdalena GilUnidad de Bioquímica y Proteómica Analíticas, Institut Pasteur de Montevideo, CP 11400, Uruguay.
Federico CarrionUnidad de Biofísica de Proteínas, Institut Pasteur de Montevideo, CP 11400, Montevideo, Uruguay.
Marcela PurificaçãoDepartamento de Bioquímica, Universidade Federal de Santa Catarina, CEP 88040-900, Florianópolis, Brazil.
Guilherme RazzeraDepartamento de Bioquímica, Universidade Federal de Santa Catarina, CEP 88040-900, Florianópolis, Brazil.
María Magdalena Portela1] Sección Bioquímica y Biología Molecular, Facultad de Ciencias, Universidad de la República, Iguá 4225, CP 11400, Montevideo, Uruguay [2] Unidad de Bioquímica y Proteómica Analíticas, Institut Pasteur de Montevideo, CP 11400, Uruguay [3] Instituto de Investigaciones Biológicas Clemente Estable, CP 11600, Montevideo, Uruguay.
Gonzalo ObalUnidad de Biofísica de Proteínas, Institut Pasteur de Montevideo, CP 11400, Montevideo, Uruguay.
Hernán TerenziDepartamento de Bioquímica, Universidade Federal de Santa Catarina, CEP 88040-900, Florianópolis, Brazil.
Otto PritschUnidad de Biofísica de Proteínas, Institut Pasteur de Montevideo, CP 11400, Montevideo, Uruguay.
Rosario DuránUnidad de Bioquímica y Proteómica Analíticas, Institut Pasteur de Montevideo, CP 11400, Uruguay.
Ana María FerreiraCátedra de Inmunología, Facultad de Ciencias-Facultad de Química, Universidad de la República, CP 11600, Montevideo, Uruguay.
Andrea VillarinoSección Bioquímica y Biología Molecular, Facultad de Ciencias, Universidad de la República, Iguá 4225, CP 11400, Montevideo, Uruguay.
Institut Pasteur de Montevideo · UYUniversidad de la República · UYUniversidade Federal de Santa Catarina · BRUniversity of Calgary · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The bacterial protein tyrosine phosphatase PtpA is a key virulence factor released by Mycobacterium tuberculosis in the cytosol of infected macrophages. So far only two unrelated macrophage components (VPS33B, GSK3α) have been identified as PtpA substrates. As tyrosine phosphatases are capable of using multiple substrates, we developed an improved methodology to pull down novel PtpA substrates from an enriched P-Y macrophage extract using the mutant PtpA D126A. This methodology reduced non-specific protein interactions allowing the identification of four novel putative PtpA substrates by MALDI-TOF-MS and nano LC-MS: three mitochondrial proteins - the trifunctional enzyme (TFP), the ATP synthase, and the sulfide quinone oxidoreductase - and the cytosolic 6-phosphofructokinase. All these proteins play a relevant role in cell energy metabolism. Using surface plasmon resonance, PtpA was found to bind immunopurified human TFP through its catalytic site since TFP-PtpA association was inhibited by a specific phosphatase inhibitor. Moreover, PtpA wt was capable of dephosphorylating immunopurified human TFP in vitro supporting that TFP may be a bona fide PtpA susbtrate. Overall, these results suggest a novel scenario where PtpA-mediated dephosphorylation may affect pathways involved in cell energy metabolism, particularly the beta oxidation of fatty acids through modulation of TFP activity and/or cell distribution.

Indexed as

Bacterial ProteinsCell LineCircular DichroismHumansMacrophagesMass SpectrometryMutationPhosphorylationProtein BindingProtein Interaction MappingProtein Tyrosine PhosphatasesRecombinant ProteinsSubstrate SpecificityBacterial ProteinsMptpA protein, Mycobacterium tuberculosisProtein Tyrosine PhosphatasesRecombinant Proteins

Identifiers

PMID25743628
PMCPMC5390082
OpenAlexW1983970191

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.