Evidence map›Paper›PMID 25743102›Full record

ArticleBiochimica et biophysica acta2015

Rescue of the temperature-sensitive, autosomal-recessive mutation R298S in the sodium-bicarbonate cotransporter NBCe1-A characterized by a weakened dimer and abnormal aggregation.

Harindarpal S Gill, Kun-Young Choi, Lakshmi Kammili, Anastas Popratiloff

Abstract read
In one paragraph

Article in Biochimica et biophysica acta, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.9field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
  2. Review
  3. Single-molecule labeling for studying trafficking of renal transporters.American journal of physiology. Renal physiology · 2018
    Review
  4. Article
  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Harindarpal S GillDepartment of Medicine, The George Washington University; Division of Renal & Hypertension, The GW Medical Faculty Associates, 2300 I (eye) Street NW, Ross Hall Room 436B, Washington D.C. 20052, United States. Electronic address: hgill@gwu.edu.
Kun-Young ChoiDepartment of Medicine, The George Washington University; Division of Renal & Hypertension, The GW Medical Faculty Associates, 2300 I (eye) Street NW, Ross Hall Room 436B, Washington D.C. 20052, United States.
Lakshmi KammiliDepartment of Medicine, The George Washington University; Division of Renal & Hypertension, The GW Medical Faculty Associates, 2300 I (eye) Street NW, Ross Hall Room 436B, Washington D.C. 20052, United States.
Anastas PopratiloffDepartment of Medicine, The George Washington University; Division of Renal & Hypertension, The GW Medical Faculty Associates, 2300 I (eye) Street NW, Ross Hall Room 436B, Washington D.C. 20052, United States.
George Washington University · USWashington University Medical Center · US

Funding

NEUROIMAGING COREP30HD040677 · NICHD · CHILDREN'S RESEARCH INSTITUTE · PI MCCARTER, ROBERT JAMES · 2001 to 2015
$15.9M
Structure-function studies of the dimerization of the N-terminal domain of NBCe1-K01DK082646 · NIDDK · GEORGE WASHINGTON UNIVERSITY · PI GILL, HARRY SINGH · 2009 to 2014
$704k
Acquisition of Zeiss 710 Confocal Laser Scanning MicroscopeS10RR025565 · NCRR · GEORGE WASHINGTON UNIVERSITY · PI POPRATILOFF, ANASTAS · 2009 to 2009
$500k
Acquisition of Zeiss Cell Observer Spinning Disk Confocal SystemS10OD010710 · OD · GEORGE WASHINGTON UNIVERSITY · PI POPRATILOFF, ANASTAS · 2012 to 2012
$500k
NCRR NIH HHS S10 RR025565NICHD NIH HHS P30 HD040677NICHD NIH HHS P30HD040677NIDDK NIH HHS K01 DK082646NIDDK NIH HHS K01DK082646NIH HHS S10 OD010710
6 · The paper itself

Abstract

backgroundBand keratopathy, an ocular disease that is characterized by hypercalcemia and opaque bands across the cornea, has been associated with kidney disease. Type-II renal tubular acidosis (RTA), a condition in which the kidneys fail to recover bicarbonate (HCO3-) in the proximal tubule of the nephron, results in HCO3- wastage in the urine and low blood pH. The development of these diseases is associated with autosomal-recessive mutations in the Na+-coupled HCO3- cotransporter NBCe1-A located at the basolateral membranes of either cell type.

methodsWe provide insight into the devastating R298S mutation found in type-II RTA-afflicted individuals using confocal-microscopy imaging of fluorescently-tagged NBCe1-A and NBCe1-A-R298S molecules expressed in human corneal endothelial and proximal tubule cells and from in-depth biophysical studies of their cytoplasmic N-terminal domains (Nt and Nt-R298S), including Nt crystal structure, melting-temperature, and homodimer dissociation constant (KD) analyses.

resultsWe illuminate and rescue trafficking defects of the R298S mutation of NBCe1-A. The KD for Nt monomer-dimer equilibrium is established. The KD for Nt-R298S is significantly higher, but immeasurable due to environmental factors (pH, temperature, concentration) that result in dimer instability leading to precipitation. The crystal structure of Nt-dimer shows that R298 is part of a putative substrate conduit and resides near the dimer interface held together by hydrogen-bond networks.

conclusionsThe R298S is a temperature-sensitive mutation in Nt that results in instability of the colloidal system leading to abnormal aggregation. GENERAL SIGNIFICANCE: Our findings provide new perspectives to the aberrant mechanism of certain ocular pathologies and type-II RTA associated with the R298S mutation.

Indexed as

MutationTransition TemperatureCell LineColloidsComputer SimulationEndothelium, CornealGenotypeHumansHydrogen BondingKidney Tubules, ProximalKineticsModels, ChemicalModels, MolecularPhenotypeProtein AggregatesProtein ConformationColloidsProtein AggregatesRecombinant Fusion ProteinsSLC4A4 protein, humanSodium-Bicarbonate SymportersComposition-gradient light scatteringConfocal microscopyProtein aggregationX-ray crystallography

Identifiers

PMID25743102
PMCPMC4424423
OpenAlexW2091355597

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.