Evidence map›Paper›PMID 25743074›Full record

ArticleFEMS microbiology letters2015

The genome of Shigella dysenteriae strain Sd1617 comparison to representative strains in evaluating pathogenesis.

Ajchara A Vongsawan, Vinayak Kapatral, Benjamin Vaisvil, Henry Burd, Oralak Serichantalergs, Malabi M Venkatesan, Carl J Mason

Open access · bronzeAbstract readComparative Study
PubMed Full text at PMC Publisher
In one paragraph

Article in FEMS microbiology letters, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.5field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
  2. Article
  3. Genome Analysis of a HistoricalFrontiers in microbiology · 2020
    Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Ajchara A VongsawanDepartment of Enteric Diseases, Armed Forces Research Institute of Medical Sciences, Bangkok 10400, Thailand ajcharataa@gmail.com carl.mason@afrims.org vinayak@igenbio.com.
Vinayak KapatralIgenbio Inc., Chicago, IL 60607, USA.
Benjamin VaisvilIgenbio Inc., Chicago, IL 60607, USA.
Henry BurdIgenbio Inc., Chicago, IL 60607, USA.
Oralak SerichantalergsDepartment of Enteric Diseases, Armed Forces Research Institute of Medical Sciences, Bangkok 10400, Thailand.
Malabi M VenkatesanWalter Reed Army Institute of Research, Division of Bacterial and Rickettsial Diseases, Silver Spring, MD 20910, USA.
Carl J MasonDepartment of Enteric Diseases, Armed Forces Research Institute of Medical Sciences, Bangkok 10400, Thailand.
Armed Forces Research Institute of Medical Science · THIgenbio (United States) · USWalter Reed Army Institute of Research · US

Funding

NIAID NIH HHS Y1-AI-4906-03
6 · The paper itself

Abstract

We sequenced and analyzed Shigella dysenteriae strain Sd1617 serotype 1 that is widely used as model strain for vaccine design, trials and research. A combination of next-generation sequencing platforms and assembly yielded two contigs representing a chromosome size of 4.34 Mb and the large virulence plasmid of 177 kb. This genome sequence is compared with other Shigella genomes in order to understand gene complexity and pathogenic factors.

Indexed as

Genome, BacterialBase SequenceChromosome MappingGenes, BacterialMolecular Sequence DataPlasmidsShigellaShigella dysenteriaeVirulencecomparisongenomeShigella dysenteriae

Identifiers

PMID25743074
PMCPMC4445032
OpenAlexW2317419013

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.