Evidence map›Paper›PMID 25741968›Full record

ArticleJournal of visualized experiments : JoVE2015

Internalization and observation of fluorescent biomolecules in living microorganisms via electroporation.

Louise Aigrain, Marko Sustarsic, Robert Crawford, Anne Plochowietz, Achillefs N Kapanidis

Open access · bronzeAbstract readVideo-Audio Media
In one paragraph

Article in Journal of visualized experiments : JoVE, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
2.9field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 12 citations in OpenAlex.

  1. Article
  2. Single Molecule Characterization of Amyloid Oligomers.Molecules (Basel, Switzerland) · 2021
    Review
  3. Article
  4. Article
  5. Review
  6. Article
  7. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Louise AigrainClarendon Laboratory, Department of Physics, University of Oxford; Wellcome Trust Sanger Institute, Genome Center.
Marko SustarsicClarendon Laboratory, Department of Physics, University of Oxford.
Robert CrawfordClarendon Laboratory, Department of Physics, University of Oxford.
Anne PlochowietzClarendon Laboratory, Department of Physics, University of Oxford.
Achillefs N KapanidisClarendon Laboratory, Department of Physics, University of Oxford; a.kapanidis1@physics.ox.ac.uk.
Clarendon College · USUniversity of Oxford · GBWellcome Sanger Institute · GB

Funding

Biotechnology and Biological Sciences Research Council BB/H01795X/1European Research Council 261227Wellcome Trust
6 · The paper itself

Abstract

The ability to study biomolecules in vivo is crucial for understanding their function in a biological context. One powerful approach involves fusing molecules of interest to fluorescent proteins such as GFP to study their expression, localization and function. However, GFP and its derivatives are significantly larger and less photostable than organic fluorophores generally used for in vitro experiments, and this can limit the scope of investigation. We recently introduced a straightforward, versatile and high-throughput method based on electroporation, allowing the internalization of biomolecules labeled with organic fluorophores into living microorganisms. Here we describe how to use electroporation to internalize labeled DNA fragments or proteins into Escherichia coli and Saccharomyces cerevisiæ, how to quantify the number of internalized molecules using fluorescence microscopy, and how to quantify the viability of electroporated cells. Data can be acquired at the single-cell or single-molecule level using fluorescence or FRET. The possibility of internalizing non-labeled molecules that trigger a physiological observable response in vivo is also presented. Finally, strategies of optimization of the protocol for specific biological systems are discussed.

Indexed as

DNAElectroporationEscherichia coliFluorescence Resonance Energy TransferFluorescent DyesMicroscopy, FluorescenceSaccharomyces cerevisiaeDNAFluorescent Dyes

Identifiers

PMID25741968
PMCPMC4354625
OpenAlexW2051416969

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.