Evidence map›Paper›PMID 25741750›Full record

ArticleJournal of the American Chemical Society2015

Identification of a key catalytic intermediate demonstrates that nitrogenase is activated by the reversible exchange of N₂ for H₂.

Dmitriy Lukoyanov, Zhi-Yong Yang, Nimesh Khadka, Dennis R Dean, Lance C Seefeldt, Brian M Hoffman

Abstract read
In one paragraph

Article in Journal of the American Chemical Society, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
5.0field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 105 citations in OpenAlex.

  1. A Proposed Complete-Cycle Mechanism for Conversion of NChembiochem : a European journal of chemical biology · 2026
    Article
  2. Review
  3. Final EThe journal of physical chemistry. B · 2024
    Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Review
  9. A Mechanism for Nitrogenase Including Loss of a Sulfide.Chemistry (Weinheim an der Bergstrasse, Germany) · 2022
    Article
  10. Comparing Molecular Mechanisms in Solar NHInternational journal of molecular sciences · 2020
    Review
  11. Review
  12. Review
  13. The Spectroscopy of Nitrogenases.Chemical reviews · 2020
    Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Control of electron transfer in nitrogenase.Current opinion in chemical biology · 2018
    Review
  19. Kinetic Understanding of NBiochemistry · 2018
    Article
  20. ENDOR Characterization of (NInorganic chemistry · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Dmitriy Lukoyanov‡Departments of Chemistry and Molecular Biosciences, Northwestern University, Evanston, Illinois 60208, United States.
Zhi-Yong Yang†Department of Chemistry and Biochemistry, Utah State University, Logan, Utah 84322, United States.
Nimesh Khadka†Department of Chemistry and Biochemistry, Utah State University, Logan, Utah 84322, United States.
Dennis R Dean§Department of Biochemistry, Virginia Tech, Blacksburg, Virginia 24061, United States.
Lance C Seefeldt†Department of Chemistry and Biochemistry, Utah State University, Logan, Utah 84322, United States.
Brian M Hoffman‡Departments of Chemistry and Molecular Biosciences, Northwestern University, Evanston, Illinois 60208, United States.
Utah State University · USNorthwestern University · USVirginia Tech · US

Funding

Coboglobins-Cobalt-Substituted Hemoglobins and MyoglobinR01GM111097 · NIGMS · NORTHWESTERN UNIVERSITY · PI HOFFMAN, BRIAN M · 2014 to 2025
$6.7M
NIGMS NIH HHS GM111097NIGMS NIH HHS R01 GM111097
6 · The paper itself

Abstract

Freeze-quenching nitrogenase during turnover with N2 traps an S = ½ intermediate that was shown by ENDOR and EPR spectroscopy to contain N2 or a reduction product bound to the active-site molybdenum-iron cofactor (FeMo-co). To identify this intermediate (termed here EG), we turned to a quench-cryoannealing relaxation protocol. The trapped state is allowed to relax to the resting E0 state in frozen medium at a temperature below the melting temperature; relaxation is monitored by periodically cooling the sample to cryogenic temperature for EPR analysis. During -50 °C cryoannealing of EG prepared under turnover conditions in which the concentrations of N2 and H2 ([H2], [N2]) are systematically and independently varied, the rate of decay of EG is accelerated by increasing [H2] and slowed by increasing [N2] in the frozen reaction mixture; correspondingly, the accumulation of EG is greater with low [H2] and/or high [N2]. The influence of these diatomics identifies EG as the key catalytic intermediate formed by reductive elimination of H2 with concomitant N2 binding, a state in which FeMo-co binds the components of diazene (an N-N moiety, perhaps N2 and two [e(-)/H(+)] or diazene itself). This identification combines with an earlier study to demonstrate that nitrogenase is activated for N2 binding and reduction through the thermodynamically and kinetically reversible reductive-elimination/oxidative-addition exchange of N2 and H2, with an implied limiting stoichiometry of eight electrons/protons for the reduction of N2 to two NH3.

Indexed as

BiocatalysisCatalytic DomainCoenzymesElectron Spin Resonance SpectroscopyEnzyme ActivationHydrogenKineticsNitrogenNitrogenaseTemperatureCoenzymesHydrogenNitrogenNitrogenase

Identifiers

PMID25741750
PMCPMC4374740
OpenAlexW1968481781

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.