Evidence map›Paper›PMID 25741696›Full record

ArticlePloS one2015

Lincosamide synthetase--a unique condensation system combining elements of nonribosomal peptide synthetase and mycothiol metabolism.

Jiri Janata, Stanislav Kadlcik, Marketa Koberska, Dana Ulanova, Zdenek Kamenik, Petr Novak, Jan Kopecky, Jitka Novotna, Bojana Radojevic, Kamila Plhackova and 2 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
4.2field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 30 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Article
  5. Chemometrics and genome mining reveal an unprecedented family of sugar acid-containing fungal nonribosomal cyclodepsipeptides.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 2 countries.

Jiri JanataInstitute of Microbiology, Academy of Sciences of the Czech Republic, v.v.i., Prague, Czech Republic.
Stanislav KadlcikInstitute of Microbiology, Academy of Sciences of the Czech Republic, v.v.i., Prague, Czech Republic.
Marketa KoberskaInstitute of Microbiology, Academy of Sciences of the Czech Republic, v.v.i., Prague, Czech Republic.
Dana UlanovaInstitute of Microbiology, Academy of Sciences of the Czech Republic, v.v.i., Prague, Czech Republic; Oceanography Section, Science Research Center, Kochi University, IMT-MEXT, Kohasu, Oko-cho, Nankoku, Kochi, 783-8505, Japan.
Zdenek KamenikInstitute of Microbiology, Academy of Sciences of the Czech Republic, v.v.i., Prague, Czech Republic.
Petr NovakInstitute of Microbiology, Academy of Sciences of the Czech Republic, v.v.i., Prague, Czech Republic.
Jan KopeckyInstitute of Microbiology, Academy of Sciences of the Czech Republic, v.v.i., Prague, Czech Republic.
Jitka NovotnaInstitute of Microbiology, Academy of Sciences of the Czech Republic, v.v.i., Prague, Czech Republic.
Bojana RadojevicInstitute of Microbiology, Academy of Sciences of the Czech Republic, v.v.i., Prague, Czech Republic.
Kamila PlhackovaInstitute of Microbiology, Academy of Sciences of the Czech Republic, v.v.i., Prague, Czech Republic.
Radek GazakInstitute of Microbiology, Academy of Sciences of the Czech Republic, v.v.i., Prague, Czech Republic.
Lucie NajmanovaInstitute of Microbiology, Academy of Sciences of the Czech Republic, v.v.i., Prague, Czech Republic.
Czech Academy of Sciences, Institute of Microbiology · CZCzech Academy of Sciences · CZKōchi University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In the biosynthesis of lincosamide antibiotics lincomycin and celesticetin, the amino acid and amino sugar units are linked by an amide bond. The respective condensing enzyme lincosamide synthetase (LS) is expected to be an unusual system combining nonribosomal peptide synthetase (NRPS) components with so far unknown amino sugar related activities. The biosynthetic gene cluster of celesticetin was sequenced and compared to the lincomycin one revealing putative LS coding ORFs shared in both clusters. Based on a bioassay and production profiles of S. lincolnensis strains with individually deleted putative LS coding genes, the proteins LmbC, D, E, F and V were assigned to LS function. Moreover, the newly recognized N-terminal domain of LmbN (LmbN-CP) was also assigned to LS as a NRPS carrier protein (CP). Surprisingly, the homologous CP coding sequence in celesticetin cluster is part of ccbZ gene adjacent to ccbN, the counterpart of lmbN, suggesting the gene rearrangement, evident also from still active internal translation start in lmbN, and indicating the direction of lincosamide biosynthesis evolution. The in vitro test with LmbN-CP, LmbC and the newly identified S. lincolnensis phosphopantetheinyl transferase Slp, confirmed the cooperation of the previously characterized NRPS A-domain LmbC with a holo-LmbN-CP in activation of a 4-propyl-L-proline precursor of lincomycin. This result completed the functional characterization of LS subunits resembling NRPS initiation module. Two of the four remaining putative LS subunits, LmbE/CcbE and LmbV/CcbV, exhibit low but significant homology to enzymes from the metabolism of mycothiol, the NRPS-independent system processing the amino sugar and amino acid units. The functions of particular LS subunits as well as cooperation of both NRPS-based and NRPS-independent LS blocks are discussed. The described condensing enzyme represents a unique hybrid system with overall composition quite dissimilar to any other known enzyme system.

Indexed as

CysteineGlycopeptidesInositolLincomycinLincosamidesPeptide Synthasescelesticetin ACysteineGlycopeptidesInositolLincomycinLincosamidesmycothiolPeptide Synthases

Identifiers

PMID25741696
PMCPMC4351081
OpenAlexW2074505751

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.