Evidence map›Paper›PMID 25741694›Full record

ArticlePloS one2015

Characterization of cellulase secretion and Cre1-mediated carbon source repression in the potential lignocellulose-degrading strain Trichoderma asperellum T-1.

Qun Wang, Hui Lin, Qi Shen, Xiaoping Fan, Naling Bai, Yuhua Zhao

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.1field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
  2. Article
  3. Tolerance mechanism ofRSC advances · 2020
    Article
  4. Protein hyperproduction in fungi by design.Applied microbiology and biotechnology · 2018
    Review
  5. Regulation ofmBio · 2018
    Article
  6. Article
  7. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Qun WangInstitute of Microbiology, College of Life Sciences, Zhejiang University, Hangzhou, China.
Hui LinInstitute of Environment Resource and Soil Fertilizer, Zhejiang Academy of Agriculture Science, Hangzhou, China.
Qi ShenInstitute of Microbiology, College of Life Sciences, Zhejiang University, Hangzhou, China.
Xiaoping FanInstitute of Microbiology, College of Life Sciences, Zhejiang University, Hangzhou, China.
Naling BaiInstitute of Microbiology, College of Life Sciences, Zhejiang University, Hangzhou, China.
Yuhua ZhaoInstitute of Microbiology, College of Life Sciences, Zhejiang University, Hangzhou, China.
Zhejiang University · CNZheJiang Academy of Agricultural Sciences · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Trichoderma asperellum, a traditional bio-control species, was demonstrated to be an excellent candidate for lignocellulose degradation in this work. Comparing to the representatively industrial strain of Trichoderma reeseiQM6a, T. asperellum T-1 showed more robust growth, stronger spore production, faster secretion of lignocellulose-decomposing enzymes and better pH tolerance. The reducing sugar released by strain T-1 on the second day of fermentation was 87% higher than that of strain QM6a, although the maximum reducing sugar yield and the cellulase production persistence of the strain T-1 were lower. Our experiment found that the cellulase secretion was strongly inhibited by glucose, suggesting the existence of carbon source repression pathway in T. asperellum T-1. The inhibiting effect was enhanced with an increase in glucose concentration and was closely related to mycelium growth. SDS-PAGE and secondary mass-spectrum identification confirmed that the expression of endo-1,4-β-xylanase I in T. asperellum T-1 was down-regulated when glucose was added. The factor Cre1, which plays an important role in the down-regulation of the endo-1,4-β-xylanase I gene, was investigated by bioinformatics methods. The protein structure of Cre1, analyzed using multiple protein sequence alignment, indicates the existence of the Zn-fingers domain. Then, the binding sites of Cre1 on the endo-1,4-β-xylanase I gene promoter were further elucidated. This study is the first report about Cre1-mediated carbon repression in the bio-control strain T. asperellum T-1. All of the above results provided good references for better understanding T. asperellum T-1 and improving its application for lignocellulose degradation.

Indexed as

Amino Acid SequenceBinding SitesCarbonCellulaseEndo-1,4-beta XylanasesFungal ProteinsGlucoseLigninMolecular Sequence DataPromoter Regions, GeneticSequence Homology, Amino AcidTrichodermaCarbonCellulaseEndo-1,4-beta XylanasesFungal ProteinsGlucoseLigninlignocellulose

Identifiers

PMID25741694
PMCPMC4351060
OpenAlexW1981617894

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.