Evidence map›Paper›PMID 25741593›Full record

ArticleCell death & disease2015

LincRNA-p21 acts as a mediator of ING1b-induced apoptosis.

U M Tran, U Rajarajacholan, J Soh, T-s Kim, S Thalappilly, C W Sensen, K Riabowol

Open access · goldAbstract read
In one paragraph

Article in Cell death & disease, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
1.9field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 31 citations in OpenAlex.

  1. Article
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  9. Article
  10. Article
  11. Article
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  13. Critical effects of long non-coding RNA on fibrosis diseases.Experimental & molecular medicine · 2018
    Review
  14. Article
  15. Long noncoding RNAs in the p53 network.Wiley interdisciplinary reviews. RNA · 2017
    Review
  16. LincRNa-p21: function and mechanism in cancer.Medical oncology (Northwood, London, England) · 2017
    Review
  17. Article
  18. Article
  19. LincRNA-p21: Implications in Human Diseases.International journal of molecular sciences · 2015
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

U M TranDepartment of Biochemistry and Molecular Biology, and Oncology, University of Calgary, 3330 Hospital Drive NW, Calgary, T2N 4N1 Alberta, Canada.
U RajarajacholanDepartment of Biochemistry and Molecular Biology, and Oncology, University of Calgary, 3330 Hospital Drive NW, Calgary, T2N 4N1 Alberta, Canada.
J SohDepartment of Biochemistry and Molecular Biology, Visual Genomics Centre, University of Calgary, 3330 Hospital Drive NW, Calgary, T2N 4N1 Alberta, Canada.
T-s KimDepartment of Biochemistry and Molecular Biology, and Oncology, University of Calgary, 3330 Hospital Drive NW, Calgary, T2N 4N1 Alberta, Canada.
S ThalappillyDepartment of Biochemistry and Molecular Biology, and Oncology, University of Calgary, 3330 Hospital Drive NW, Calgary, T2N 4N1 Alberta, Canada.
C W SensenDepartment of Biochemistry and Molecular Biology, Visual Genomics Centre, University of Calgary, 3330 Hospital Drive NW, Calgary, T2N 4N1 Alberta, Canada.
K RiabowolDepartment of Biochemistry and Molecular Biology, and Oncology, University of Calgary, 3330 Hospital Drive NW, Calgary, T2N 4N1 Alberta, Canada.
University of Calgary · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

ING1b is a tumor suppressor that affects transcription, cell cycle control and apoptosis. ING1b is deregulated in disease, and its activity is closely linked to that of p53. In addition to regulating protein-coding genes, we found that ING1b also influences the expression of large intergenic non-coding RNAs (lincRNAs). In particular, lincRNA-p21 was significantly induced after DNA-damage stress or by ING1b overexpression. Furthermore, lincRNA-p21 expression in response to DNA damage was significantly attenuated in cells lacking ING1b. LincRNA-p21 is also a target of p53 and can trigger apoptosis in mouse cell models. We found that this function of lincRNA-p21 is conserved in human cell models. Moreover, ING1b and p53 could function independently to influence lincRNA-p21 expression. However, their effects become more additive under conditions of stress. In particular, ING1b regulates lincRNA-p21 levels by binding to its promoter and is required for induction of lincRNA-p21 by p53. The ability of ING1b to cause apoptosis is also impaired in the absence of lincRNA-p21. Surprisingly, deletion of the ING1b plant homeodomain, which allows it to bind histones and regulate chromatin structure, did not alter regulation of lincRNA-p21. Our findings suggest that ING1b induces lincRNA-p21 expression independently of histone 3 lysine 4 trimethylation mark recognition and that lincRNA-p21 functions downstream of ING1b. Thus, regulation at the level of lincRNA-p21 may represent the point at which ING1b and p53 pathways converge to induce apoptosis under specific stress conditions.

Indexed as

ApoptosisCell Line, TumorCell SurvivalChromatin ImmunoprecipitationCyclin-Dependent Kinase Inhibitor p21HumansInhibitor of Growth Protein 1In Situ Nick-End LabelingIntracellular Signaling Peptides and ProteinsNuclear ProteinsPromoter Regions, GeneticReal-Time Polymerase Chain ReactionRNA InterferenceRNA, Long NoncodingTumor Suppressor ProteinsCyclin-Dependent Kinase Inhibitor p21ING1 protein, humanInhibitor of Growth Protein 1Intracellular Signaling Peptides and ProteinsNuclear ProteinsRNA, Long NoncodingTumor Suppressor Proteins

Identifiers

PMID25741593
PMCPMC4385912
OpenAlexW2090551452

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.