ArticleFrontiers in plant science2015
Mango (Mangifera indica L.) cv. Kent fruit mesocarp de novo transcriptome assembly identifies gene families important for ripening.
Article in Frontiers in plant science, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.
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27 citing papers in PubMed, 80 citations in OpenAlex.
- Mango mesocarp fibers are a continuum of fibrous endocarp structures that are co-lignified during seed coat hardening.Frontiers in plant science · 2026Article
- Integrative genomics for mango genetics and breeding.Horticulture research · 2026Article
- Glucanases and Chitinases inMolecules (Basel, Switzerland) · 2024Article
- Fruit softening: evidence for rhamnogalacturonan lyase action in vivo in ripe fruit cell walls.Annals of botany · 2024Article
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- Promoter insertion leads to polyembryony in mango - a case of convergent evolution with citrus.Horticulture research · 2023Article
- MangoBase: A Genomics Portal and Gene Expression Atlas forPlants (Basel, Switzerland) · 2023Article
- Advances in sequencing and key character analysis of mango (Horticulture research · 2023Article
- Comparative transcriptome analysis provides novel insights into molecular response of salt-tolerant and sensitive polyembryonic mango genotypes to salinity stress at seedling stage.Frontiers in plant science · 2023Article
- Transcriptome Analysis of Soursop (Plants (Basel, Switzerland) · 2022Article
- Systems Biology Applied to the Study of Papaya Fruit Ripening: The Influence of Ethylene on Pulp Softening.Cells · 2021Article
- The 'Tommy Atkins' mango genome reveals candidate genes for fruit quality.BMC plant biology · 2021Article
- Dynamic Analyses of Transcriptome and Metabolic Profiling: Revealing Molecular Insight of Aroma Synthesis of Mango (Frontiers in plant science · 2021Article
- Combining independent de novo assemblies to optimize leaf transcriptome of Persian walnut.PloS one · 2020Article
- Transcriptome analysis of acerola fruit ripening: insights into ascorbate, ethylene, respiration, and softening metabolisms.Plant molecular biology · 2019Article
- Genome-Wide Identification of Mango (Frontiers in plant science · 2019Article
- A Transcript and Metabolite Atlas of Blackcurrant Fruit Development Highlights Hormonal Regulation and Reveals the Role of Key Transcription Factors.Frontiers in plant science · 2018Article
- Transcriptional transitions in Alphonso mango (Mangifera indica L.) during fruit development and ripening explain its distinct aroma and shelf life characteristics.Scientific reports · 2017Article
- A genome-wide transcriptome map of pistachio (Pistacia vera L.) provides novel insights into salinity-related genes and marker discovery.BMC genomics · 2017Article
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Authors and funding
8 authors at 4 institutions in 3 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Fruit ripening is a physiological and biochemical process genetically programmed to regulate fruit quality parameters like firmness, flavor, odor and color, as well as production of ethylene in climacteric fruit. In this study, a transcriptomic analysis of mango (Mangifera indica L.) mesocarp cv. "Kent" was done to identify key genes associated with fruit ripening. Using the Illumina sequencing platform, 67,682,269 clean reads were obtained and a transcriptome of 4.8 Gb. A total of 33,142 coding sequences were predicted and after functional annotation, 25,154 protein sequences were assigned with a product according to Swiss-Prot database and 32,560 according to non-redundant database. Differential expression analysis identified 2,306 genes with significant differences in expression between mature-green and ripe mango [1,178 up-regulated and 1,128 down-regulated (FDR ≤ 0.05)]. The expression of 10 genes evaluated by both qRT-PCR and RNA-seq data was highly correlated (R = 0.97), validating the differential expression data from RNA-seq alone. Gene Ontology enrichment analysis, showed significantly represented terms associated to fruit ripening like "cell wall," "carbohydrate catabolic process" and "starch and sucrose metabolic process" among others. Mango genes were assigned to 327 metabolic pathways according to Kyoto Encyclopedia of Genes and Genomes database, among them those involved in fruit ripening such as plant hormone signal transduction, starch and sucrose metabolism, galactose metabolism, terpenoid backbone, and carotenoid biosynthesis. This study provides a mango transcriptome that will be very helpful to identify genes for expression studies in early and late flowering mangos during fruit ripening.
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