Evidence map›Paper›PMID 25740947›Full record

ArticleJournal of immunology (Baltimore, Md. : 1950)2015

B cell Rab7 mediates induction of activation-induced cytidine deaminase expression and class-switching in T-dependent and T-independent antibody responses.

Egest J Pone, Tonika Lam, Zheng Lou, Rui Wang, Yuhui Chen, Dongfang Liu, Aimee L Edinger, Zhenming Xu, Paolo Casali

Open access · bronzeAbstract read
In one paragraph

Article in Journal of immunology (Baltimore, Md. : 1950), 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
0.7field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 19 citations in OpenAlex.

  1. Article
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  7. Article
  8. The Maintenance of Memory Plasma Cells.Frontiers in immunology · 2019
    Review
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  10. Review
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  14. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 2 countries.

Egest J PoneDepartment of Microbiology and Immunology, School of Medicine, University of Texas Health Science Center, San Antonio, TX 78229;
Tonika LamDepartment of Microbiology and Immunology, School of Medicine, University of Texas Health Science Center, San Antonio, TX 78229; Department of Molecular Biology and Biochemistry, University of California, Irvine, Irvine, CA 92697;
Zheng LouDepartment of Microbiology and Immunology, School of Medicine, University of Texas Health Science Center, San Antonio, TX 78229;
Rui WangDepartment of Microbiology and Immunology, School of Medicine, University of Texas Health Science Center, San Antonio, TX 78229; Xiangya Medical School, Central South University of China, 410000 Changsha, Hunan Province, China;
Yuhui ChenCenter for Human Immunobiology, Texas Children's Hospital, Baylor College of Medicine, Houston, TX 77030; and.
Dongfang LiuCenter for Human Immunobiology, Texas Children's Hospital, Baylor College of Medicine, Houston, TX 77030; and.
Aimee L EdingerDepartment of Developmental and Cell Biology, University of California, Irvine, Irvine, CA 92697.
Zhenming XuDepartment of Microbiology and Immunology, School of Medicine, University of Texas Health Science Center, San Antonio, TX 78229; xuz3@uthscsa.edu pcasali@uthscsa.edu.
Paolo CasaliDepartment of Microbiology and Immunology, School of Medicine, University of Texas Health Science Center, San Antonio, TX 78229; xuz3@uthscsa.edu pcasali@uthscsa.edu.
The University of Texas Health Science Center at San Antonio · USUniversity of California, Irvine · USBaylor College of Medicine · USCentral South University · CNTexas Children's Hospital · US

Funding

Intrinsic B cell epigenetic regulation of antibody and autoantibody responses by Sirt1R01AI105813 · NIAID · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI CASALI, PAOLO · 2014 to 2023
$4.5M
The adaptor protein Crk in immune responsesR01AI130197 · NIAID · RUTGERS BIOMEDICAL AND HEALTH SCIENCES · PI Dongfang Liu · 2018 to 2026
$4.2M
Somatic hypermutation and class switching in autoimmunityR01AI079705 · NIAID · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI CASALI, PAOLO · 2010 to 2019
$4.1M
Immunoglobulin class switch DNA recombinationR01AI045011 · NIAID · WEILL MEDICAL COLLEGE OF CORNELL UNIV · PI CASALI, PAOLO · 2000 to 2011
$3.8M
Immunology Research Training ProgramT32AI060573 · NIAID · UNIVERSITY OF CALIFORNIA-IRVINE · PI PEARLMAN, ERIC · 2005 to 2020
$1.9M
Effects of sphingolipids on nutrient transporter expression and bioenergeticsR01GM089919 · NIGMS · UNIVERSITY OF CALIFORNIA-IRVINE · PI EDINGER, AIMEE L · 2010 to 2014
$1.5M
The adaptor protein Crk in immune responsesR56AI130197 · NIAID · RUTGERS BIOMEDICAL AND HEALTH SCIENCES · PI LIU, DONGFANG · 2017 to 2023
$874k
Bispecific cytotoxic lymphocytes in HIV-related lymphomaR21HL125018 · NHLBI · RBHS-NEW JERSEY MEDICAL SCHOOL · PI LIU, DONGFANG · 2015 to 2016
$449k
HIV-1-Specific CTL Exhaustion at Immune SynapseR21AI124769 · NIAID · RBHS-NEW JERSEY MEDICAL SCHOOL · PI LIU, DONGFANG · 2016 to 2017
$446k
Targeting of Master Signaling Molecule to Restore Functions of Exhausted HIV-specific CTLsR21AI129594 · NIAID · RBHS-NEW JERSEY MEDICAL SCHOOL · PI LIU, DONGFANG · 2017 to 2018
$438k
Molecular mechanisms in the generation of autoantibodies and lupusR56AI079705 · NIAID · UNIVERSITY OF CALIFORNIA-IRVINE · PI CASALI, PAOLO · 2008 to 2008
$381k
Epigenetic downregulation of the antibody response and inhibition of autoimmunityR56AI105813 · NIAID · UNIVERSITY OF CALIFORNIA-IRVINE · PI CASALI, PAOLO · 2013 to 2013
$286k
NIAID NIH HHS AI079705NIAID NIH HHS AI 105813NIAID NIH HHS R01 AI045011NIAID NIH HHS R01 AI079705NIAID NIH HHS R01 AI105813NIAID NIH HHS R01 AI130197NIAID NIH HHS R21 AI124769NIAID NIH HHS R21 AI129594NIAID NIH HHS R56 AI079705NIAID NIH HHS R56 AI105813NIAID NIH HHS T32 AI 060573NIGMS NIH HHS GM 089919NIGMS NIH HHS R01 GM089919
6 · The paper itself

Abstract

Class switch DNA recombination (CSR) is central to the maturation of the Ab response because it diversifies Ab effector functions. Like somatic hypermutation, CSR requires activation-induced cytidine deaminase (AID), whose expression is restricted to B cells, as induced by CD40 engagement or dual TLR-BCR engagement (primary CSR-inducing stimuli). By constructing conditional knockout Igh(+/C)γ(1-cre)Rab7(fl/fl) mice, we identified a B cell-intrinsic role for Rab7, a small GTPase involved in intracellular membrane functions, in mediating AID induction and CSR. Igh(+/C)γ(1-cre)Rab7(fl/fl) mice displayed normal B and T cell development and were deficient in Rab7 only in B cells undergoing Igh(C)γ(1-cre) Iγ1-Sγ1-Cγ1-cre transcription, as induced--like Igh germline Iγ1-Sγ1-Cγ1 and Iε-Sε-Cε transcription--by IL-4 in conjunction with a primary CSR-inducing stimulus. These mice could not mount T-independent or T-dependent class-switched IgG1 or IgE responses while maintaining normal IgM levels. Igh(+/C)γ(1-cre)Rab7(fl/fl) B cells showed, in vivo and in vitro, normal proliferation and survival, normal Blimp-1 expression and plasma cell differentiation, as well as intact activation of the noncanonical NF-κB, p38 kinase, and ERK1/2 kinase pathways. They, however, were defective in AID expression and CSR in vivo and in vitro, as induced by CD40 engagement or dual TLR1/2-, TLR4-, TLR7-, or TLR9-BCR engagement. In Igh(+/C)γ(1-cre)Rab7(fl/fl) B cells, CSR was rescued by enforced AID expression. These findings, together with our demonstration that Rab7-mediated canonical NF-κB activation, as critical to AID induction, outline a novel role of Rab7 in signaling pathways that lead to AID expression and CSR, likely by promoting assembly of signaling complexes along intracellular membranes.

Indexed as

Antibody FormationGene Expression RegulationImmunoglobulin Class SwitchingAICDA (Activation-Induced Cytidine Deaminase)AnimalsAntibody SpecificityAntigensB-LymphocytesCell DifferentiationCell SurvivalCytidine DeaminaseGene OrderGenetic LociGerm CellsImmunoglobulin EImmunoglobulin GAICDA (Activation-Induced Cytidine Deaminase)AntigensCytidine DeaminaseImmunoglobulin EImmunoglobulin GImmunoglobulin gamma-ChainsImmunoglobulin Heavy ChainsInterleukin-4NF-kappa Brab7 GTP-Binding Proteinsrab7 GTP-binding proteins, humanrab7 GTP-binding proteins, mouserab GTP-Binding Proteins

Identifiers

PMID25740947
PMCPMC4643723
OpenAlexW1618854008

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.