Evidence map›Paper›PMID 25740772›Full record

ArticleJournal of clinical microbiology2015

Matrix-assisted laser desorption ionization-time of flight and comparative genomic analysis of M-18 group a Streptococcus strains associated with an acute rheumatic fever outbreak in northeast Italy in 2012 and 2013.

Paolo Gaibani, Erika Scaltriti, Claudio Foschi, Enrico Baggio, Maria Vittoria Tamburini, Roberta Creti, Maria Grazia Pascucci, Marco Fagioni, Simone Ambretti, Francesco Comandatore and 2 more

Open access · bronzeAbstract read
In one paragraph

Article in Journal of clinical microbiology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.7field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 8 citations in OpenAlex.

  1. Outbreak of invasive Group A streptococcus disease in a nursing home in Ireland in February 2023 caused byEuro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin · 2024
    Article
  2. Article
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 5 institutions in 2 countries.

Paolo GaibaniOperative Unit of Clinical Microbiology, St. Orsola-Malpighi University Hospital, Bologna, Italy paolo.gaibani@unibo.it.
Erika ScaltritiSezione Diagnostica di Parma, Istituto Zooprofilattico Sperimentale della Lombardia e dell'Emilia Romagna, Parma, Italy.
Claudio FoschiOperative Unit of Clinical Microbiology, St. Orsola-Malpighi University Hospital, Bologna, Italy.
Enrico BaggioOperative Unit of Clinical Microbiology, St. Orsola-Malpighi University Hospital, Bologna, Italy.
Maria Vittoria TamburiniOperative Unit of Clinical Microbiology, St. Orsola-Malpighi University Hospital, Bologna, Italy.
Roberta CretiDipartimento di Malattie Infettive, Parassitarie ed Immunomediate, Istituto Superiore di Sanità, Rome, Italy.
Maria Grazia PascucciPublic Health Authority Emilia Romagna, Rome, Italy.
Marco FagioniBruker Daltonics s.r.l., Macerata, Italy.
Simone AmbrettiOperative Unit of Clinical Microbiology, St. Orsola-Malpighi University Hospital, Bologna, Italy.
Francesco ComandatoreDipartimento di Scienze Veterinarie e Sanità Pubblica, Università degli Studi di Milano, Milan, Italy.
Stefano PongoliniSezione Diagnostica di Parma, Istituto Zooprofilattico Sperimentale della Lombardia e dell'Emilia Romagna, Parma, Italy.ORCID http://orcid.org/0000-0002-4823-3562
Maria Paola LandiniOperative Unit of Clinical Microbiology, St. Orsola-Malpighi University Hospital, Bologna, Italy.
IRCCS Azienda Ospedliero-Universitaria di Bologna Policlinico di Sant'Orsola · ITIstituto Zooprofilattico Sperimentale della Lombardia e dell'Emilia Romagna "Bruno Ubertini" · ITBruker (United States) · USIstituto Superiore di Sanità · ITUniversity of Milan · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Acute rheumatic fever (ARF) is a postsuppurative sequela caused by Streptococcus pyogenes infections affecting school-age children. We describe here the occurrence of an ARF outbreak that occurred in Bologna province, northeastern Italy, between November 2012 and May 2013. Molecular analysis revealed that ARF-related group A Streptococcus (GAS) strains belonged to the M-18 serotype, including subtypes emm18.29 and emm18.32. All M-18 GAS strains shared the same antigenic profile, including SpeA, SpeB, SpeC, SpeL, SpeM, and SmeZ. Matrix-assisted laser desorption ionization-time of flight (MALDI-TOF) analysis revealed that M-18 GAS strains grouped separately from other serotypes, suggesting a different S. pyogenes lineage. Single nucleotide polymorphisms and phylogenetic analysis based on whole-genome sequencing showed that emm18.29 and emm18.32 GAS strains clustered in two distinct groups, highlighting genetic variations between these subtypes. Comparative analysis revealed a similar genome architecture between emm18.29 and emm18.32 strains that differed from noninvasive emm18.0 strains. The major sources of differences between M-18 genomes were attributable to the prophage elements. Prophage regions contained several virulence factors that could have contributed to the pathogenic potential of emm18.29 and emm18.32 strains. Notably, phage ΦSPBO.1 carried erythrogenic toxin A gene (speA1) in six ARF-related M-18 GAS strains but not in emm18.0 strains. In addition, a phage-encoded hyaluronidase gene (hylP.2) presented different variants among M-18 GAS strains by showing internal deletions located in the α-helical and TSβH regions. In conclusion, our study yielded insights into the genome structure of M-18 GAS strains responsible for the ARF outbreak in Italy, thus expanding our knowledge of this serotype.

Indexed as

Disease OutbreaksGenomicsSerotypingSpectrometry, Mass, Matrix-Assisted Laser Desorption-IonizationAnimalsChildChild, PreschoolDNA, BacterialFemaleGenome, BacterialHumansItalyMaleMicrobiological TechniquesPhylogenyPolymorphism, Single NucleotideDNA, BacterialVirulence Factors

Identifiers

PMID25740772
PMCPMC4400794
OpenAlexW2103710818

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.