Evidence map›Paper›PMID 25739084›Full record

ArticleInternational journal of molecular sciences2015

Proteome analysis of dormancy-released seeds of Fraxinus mandshurica Rupr. in response to re-dehydration under different conditions.

Peng Zhang, Di Liu, Hailong Shen, Yuhua Li, Yuzhe Nie

Abstract read
In one paragraph

Article in International journal of molecular sciences, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Proteomics, Holm Oak (International journal of molecular sciences · 2019
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Peng ZhangState Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, Harbin 150040, China. zhangpeng@nefu.edu.cn.
Di LiuState Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, Harbin 150040, China. liudi@ybu.edu.cn.
Hailong ShenState Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, Harbin 150040, China. shenhl-cf@nefu.edu.cn.
Yuhua LiCollege of Life Science, Daqing Bio-tech Research Institute, Northeast Forestry University, Harbin 150040, China. lyhshen@126.com.
Yuzhe NieCollege of Life Science, Daqing Bio-tech Research Institute, Northeast Forestry University, Harbin 150040, China. nieyuzhe@163.com.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Desiccation tolerance is the ability of orthodox seeds to achieve equilibrium with atmospheric relative humidity and to survive in this state. Understanding how orthodox seeds respond to dehydration is important for improving quality and long-term storage of seeds under low temperature and drought stress conditions. Long-term storage of seeds is an artificial situation, because in most natural situations a seed that has been shed may not remain in a desiccated state for very long, and if dormant it may undergo repeated cycles of hydration. Different types of seeds are differentially sensitive to desiccation and this directly affects long-term storage. For these reasons, many researchers are investigating loss of desiccation tolerance during orthodox seed development to understand how it is acquired. In this study, the orthodox seed proteome response of Fraxinus mandshurica Rupr. to dehydration (to a relative water content of 10%, which mimics seed dehydration) was investigated under four different conditions viz. 20 °C; 20 °C with silica gel; 1 °C; and 1 °C after pretreatment with Ca2+. Proteins from seeds dehydrated under different conditions were extracted and separated by two-dimensional difference gel electrophoresis (2D-DIGE). A total of 2919 protein spots were detected, and high-resolution 2D-DIGE indicated there were 27 differentially expressed. Seven of these were identified using MALDI TOF/TOF mass spectrometry. Inferences from bioinformatics annotations of these proteins established the possible involvement of detoxifying enzymes, transport proteins, and nucleotide metabolism enzymes in response to dehydration. Of the seven differentially abundant proteins, the amounts of six were down-regulated and one was up-regulated. Also, a putative acyl-coenzyme A oxidase of the glyoxylate cycle increased in abundance. In particular, the presence of kinesin-1, a protein important for regulation and cargo interaction, was up-regulated in seeds exposed to low temperature dehydration. Kinesin-1 is present in all major lineages, but it is rarely detected in seed desiccation tolerance of woody species. These observations provide new insight into the proteome of seeds in deep dormancy under different desiccation conditions.

Indexed as

DesiccationElectrophoresis, Gel, Two-DimensionalFraxinusPlant DormancyPlant ProteinsProteomeProteomicsSeedsSpectrometry, Mass, Matrix-Assisted Laser Desorption-IonizationWaterPlant ProteinsProteomeWater

Identifiers

PMID25739084
PMCPMC4394444

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.