Evidence map›Paper›PMID 25738741›Full record

ArticleThe Biochemical journal2015

An antibody raised against a pathogenic serpin variant induces mutant-like behaviour in the wild-type protein.

James A Irving, Elena Miranda, Imran Haq, Juan Perez, Vadim R Kotov, Sarah V Faull, Neda Motamedi-Shad, David A Lomas

Open access · hybridAbstract read
In one paragraph

Article in The Biochemical journal, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.5field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 21 citations in OpenAlex.

  1. Article
  2. Conformational transition of the Ixodes ricinus salivary serpin Iripin-4.Acta crystallographica. Section D, Structural biology · 2023
    Article
  3. Article
  4. Scaling Concepts in Serpin Polymer Physics.Materials (Basel, Switzerland) · 2021
    Article
  5. Article
  6. Article
  7. New Therapeutic Targets for Alpha-1 Antitrypsin Deficiency.Chronic obstructive pulmonary diseases (Miami, Fla.) · 2018
    Article
  8. Article
  9. Article
  10. Cellular folding pathway of a metastable serpin.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
  11. Deficiency Mutations of Alpha-1 Antitrypsin. Effects on Folding, Function, and Polymerization.American journal of respiratory cell and molecular biology · 2016
    Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

James A Irving*Wolfson Institute for Biomedical Research, University College London, Gower Street, London WC1E 6BN, U.K.
Elena Miranda†Department of Biology and Biotechnologies 'Charles Darwin' and Pasteur Institute-Cenci Bolognetti Foundation, Sapienza University of Rome, Piazzale Aldo Moro 5, 00185 Rome, Italy.
Imran Haq*Wolfson Institute for Biomedical Research, University College London, Gower Street, London WC1E 6BN, U.K.
Juan Perez‡Department of Cell Biology, Genetics and Animal Physiology, University of Malaga, Campus de Teatinos, 29071 Malaga, Spain.
Vadim R Kotov§Department of Pharmacology, Robert Wood Johnson Medical School, Rutgers University, 675 Hoes Lane Piscataway, NJ 08854, U.S.A.
Sarah V Faull*Wolfson Institute for Biomedical Research, University College London, Gower Street, London WC1E 6BN, U.K.
Neda Motamedi-Shad*Wolfson Institute for Biomedical Research, University College London, Gower Street, London WC1E 6BN, U.K.
David A Lomas*Wolfson Institute for Biomedical Research, University College London, Gower Street, London WC1E 6BN, U.K.
Istituto Pasteur · ITUniversidad de Málaga · ES

Funding

Telethon GGP11057
6 · The paper itself

Abstract

A monoclonal antibody (mAb) that binds to a transient intermediate may act as a catalyst for the corresponding reaction; here we show this principle can extend on a macro molecular scale to the induction of mutant-like oligomerization in a wild-type protein. Using the common pathogenic E342K (Z) variant of α1-antitrypsin as antigen-whose native state is susceptible to the formation of a proto-oligomeric intermediate-we have produced a mAb (5E3) that increases the rate of oligomerization of the wild-type (M) variant. Employing ELISA, gel shift, thermal stability and FRET time-course experiments, we show that mAb5E3 does not bind to the native state of α1-antitrypsin, but recognizes a cryptic epitope in the vicinity of the post-helix A loop and strand 4C that is revealed upon transition to the polymerization intermediate, and which persists in the ensuing oligomer. This epitope is not shared by loop-inserted monomeric conformations. We show the increased amenity to polymerization by either the pathogenic E342K mutation or the binding of mAb5E3 occurs without affecting the energetic barrier to polymerization. As mAb5E3 also does not alter the relative stability of the monomer to intermediate, it acts in a manner similar to the E342K mutant, by facilitating the conformational interchange between these two states.

Indexed as

alpha 1-AntitrypsinAmino Acid SubstitutionAnimalsAntibodies, Monoclonal, Murine-DerivedAntibody SpecificityEpitopesGenetic VariationHumansImmunoglobulin Fab FragmentsMiceMice, Inbred BALB CModels, MolecularMutationProtein ConformationProtein MultimerizationProtein Stabilityalpha 1-AntitrypsinAntibodies, Monoclonal, Murine-DerivedEpitopesImmunoglobulin Fab FragmentsSERPINA1 protein, human

Identifiers

PMID25738741
PMCPMC4422257
OpenAlexW2052820216

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.