Evidence map›Paper›PMID 25737550›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2015

L596-W733 bond between the start of the S4-S5 linker and the TRP box stabilizes the closed state of TRPV4 channel.

Jinfeng Teng, Stephen H Loukin, Andriy Anishkin, Ching Kung

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
4.4field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 53 citations in OpenAlex.

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  4. PIPNature communications · 2024
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  15. Novel compounds that specifically bind and modulate MscL: insights into channel gating mechanisms.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2019
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 2 countries.

Jinfeng TengLaboratory of Molecular and Cell Biology and.
Stephen H LoukinLaboratory of Molecular and Cell Biology and.
Andriy AnishkinDepartment of Biology, University of Maryland-College Park, College Park, MD 20742.
Ching KungLaboratory of Molecular and Cell Biology and Department of Genetics, University of Wisconsin-Madison, Madison, WI 53706; and ckung@wisc.edu.
Institute of Molecular and Cell Biology · RUUniversity of Maryland, College Park · USUniversity of Wisconsin–Madison · US

Funding

TRPV4: Mechanosensitivity and Skeletal DysplasiaR01GM096088 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI KUNG, CHING · 2011 to 2014
$1.1M
NIGMS NIH HHS GM096088NIGMS NIH HHS R01 GM096088
6 · The paper itself

Abstract

Unlike other cation channels, each subunit of most transient receptor potential (TRP) channels has an additional TRP-domain helix with an invariant tryptophan immediately trailing the gate-bearing S6. Recent cryo-electron microscopy of TRP vanilloid subfamily, member 1 structures revealed that this domain is a five-turn amphipathic helix, and the invariant tryptophan forms a bond with the beginning of the four-turn S4-S5 linker helix. By homology modeling, we identified the corresponding L596-W733 bond in TRP vanilloid subfamily, member 4 (TRPV4). The L596P mutation blocks bone development in Kozlowski-type spondylometaphyseal dysplasia in human. Our previous screen also isolated W733R as a strong gain-of-function (GOF) mutation that suppresses growth when the W733R channel is expressed in yeast. We show that, when expressed in Xenopus oocytes, TRPV4 with the L596P or W733R mutation displays normal depolarization-induced activation and outward rectification. However, these mutant channels have higher basal open probabilities and limited responses to the agonist GSK1016790A, explaining their biological GOF phenotypes. In addition, W733R current fails to inactivate during depolarization. Systematic replacement of W733 with amino acids of different properties produced similar electrophysiological and yeast phenotypes. The results can be interpreted consistently in the context of the homology model of TRPV4 molecule we have developed and refined using simulations in explicit medium. We propose that this bond maintains the orientation of the S4-S5 linker to keep the S6 gate closed. Further, the two partner helices, both amphipathic and located at the polar-nonpolar interface of the inner lipid monolayer, may receive and integrate various physiological stimuli.

Indexed as

Ion Channel GatingAmino Acid SubstitutionAnimalsHumansLeucineMutant ProteinsMutationOocytesPhenotypeProtein StabilityProtein Structure, SecondarySaccharomyces cerevisiaeStructure-Activity RelationshipTRPV Cation ChannelsTryptophanXenopusLeucineMutant ProteinsTRPV4 protein, humanTRPV Cation ChannelsTryptophangatingopen mechanismTRP channelTRP domain

Identifiers

PMID25737550
PMCPMC4371962
OpenAlexW2048994753

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.