Evidence map›Paper›PMID 25737449›Full record

ArticleThe Journal of biological chemistry2015

Structural basis for penetration of the glycan shield of hepatitis C virus E2 glycoprotein by a broadly neutralizing human antibody.

Yili Li, Brian G Pierce, Qian Wang, Zhen-Yong Keck, Thomas R Fuerst, Steven K H Foung, Roy A Mariuzza

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 56 papers.

0numbers the graph read from it
0cells of the map it votes in
56citing papers in PubMed
5.6field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

56 citing papers in PubMed, 77 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Review
  9. Article
  10. Review
  11. Article
  12. Article
  13. Review
  14. Review
  15. Review
  16. Review
  17. Review
  18. Review
  19. Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Yili LiFrom the University of Maryland Institute for Bioscience and Biotechnology Research, W. M. Keck Laboratory for Structural Biology, Rockville, Maryland 20850, the Department of Cell Biology and Molecular Genetics, University of Maryland, College Park, Maryland 20742, and.
Brian G PierceFrom the University of Maryland Institute for Bioscience and Biotechnology Research, W. M. Keck Laboratory for Structural Biology, Rockville, Maryland 20850.
Qian WangFrom the University of Maryland Institute for Bioscience and Biotechnology Research, W. M. Keck Laboratory for Structural Biology, Rockville, Maryland 20850, the Department of Cell Biology and Molecular Genetics, University of Maryland, College Park, Maryland 20742, and.
Zhen-Yong Keckthe Department of Pathology, Stanford University School of Medicine, Stanford, California 94304.
Thomas R FuerstFrom the University of Maryland Institute for Bioscience and Biotechnology Research, W. M. Keck Laboratory for Structural Biology, Rockville, Maryland 20850, the Department of Cell Biology and Molecular Genetics, University of Maryland, College Park, Maryland 20742, and.
Steven K H Foungthe Department of Pathology, Stanford University School of Medicine, Stanford, California 94304.
Roy A MariuzzaFrom the University of Maryland Institute for Bioscience and Biotechnology Research, W. M. Keck Laboratory for Structural Biology, Rockville, Maryland 20850, the Department of Cell Biology and Molecular Genetics, University of Maryland, College Park, Maryland 20742, and rmariuzz@umd.edu.
Institute for Bioscience and Biotechnology ResearchStanford University · USUniversity of Maryland, College Park · US

Funding

STRUCTURE AND FUNCTION OF T CELL ANTIGEN RECEPTORSR37AI036900 · NIAID · UNIVERSITY OF MD BIOTECHNOLOGY INSTITUTE · PI MARIUZZA, ROY A · 2000 to 2009
$3.2M
STRUCTURE AND FUNCTION OF T CELL ANTIGEN RECEPTORSR01AI036900 · NIAID · UNIV OF MARYLAND, COLLEGE PARK · PI MARIUZZA, ROY A · 1995 to 2014
$1.8M
NIAID NIH HHS AI036900NIAID NIH HHS R01 AI036900NIAID NIH HHS R37 AI036900
6 · The paper itself

Abstract

Hepatitis C virus (HCV) is a major cause of liver cirrhosis and hepatocellular carcinoma. A challenge for HCV vaccine development is to identify conserved epitopes able to elicit protective antibodies against this highly diverse virus. Glycan shielding is a mechanism by which HCV masks such epitopes on its E2 envelope glycoprotein. Antibodies to the E2 region comprising residues 412-423 (E2(412-423)) have broadly neutralizing activities. However, an adaptive mutation in this linear epitope, N417S, is associated with a glycosylation shift from Asn-417 to Asn-415 that enables HCV to escape neutralization by mAbs such as HCV1 and AP33. By contrast, the human mAb HC33.1 can neutralize virus bearing the N417S mutation. To understand how HC33.1 penetrates the glycan shield created by the glycosylation shift to Asn-415, we determined the structure of this broadly neutralizing mAb in complex with its E2(412-423) epitope to 2.0 Å resolution. The conformation of E2(412-423) bound to HC33.1 is distinct from the β-hairpin conformation of this peptide bound to HCV1 or AP33, because of disruption of the β-hairpin through interactions with the unusually long complementarity-determining region 3 of the HC33.1 heavy chain. Whereas Asn-415 is buried by HCV1 and AP33, it is solvent-exposed in the HC33.1-E2(412-423) complex, such that glycosylation of Asn-415 would not prevent antibody binding. Furthermore, our results highlight the structural flexibility of the E2(412-423) epitope, which may serve as an immune evasion strategy to impede induction of antibodies targeting this site by reducing its antigenicity.

Indexed as

Antibodies, NeutralizingAntigen-Antibody ComplexComplementarity Determining RegionsCrystallography, X-RayEpitopesGene Expression Regulation, ViralGlycosylationHepacivirusHepatitis C AntigensHumansImmune EvasionModels, MolecularPolysaccharidesProtein Interaction Domains and MotifsProtein Structure, SecondaryRecombinant ProteinsAntibodies, NeutralizingAntigen-Antibody ComplexComplementarity Determining RegionsEpitopesglycoprotein E2, Hepatitis C virusHepatitis C AntigensPolysaccharidesRecombinant ProteinsViral Envelope ProteinsAntibodyCrystal StructureGlycosylationHepatitis C Virus (HCV)NeutralizationVaccine

Identifiers

PMID25737449
PMCPMC4400327
OpenAlexW1998738356

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.