Evidence map›Paper›PMID 25736695›Full record

ArticleNature communications2015

Glycine decarboxylase deficiency causes neural tube defects and features of non-ketotic hyperglycinemia in mice.

Yun Jin Pai, Kit-Yi Leung, Dawn Savery, Tim Hutchin, Helen Prunty, Simon Heales, Margaret E Brosnan, John T Brosnan, Andrew J Copp, Nicholas D E Greene

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 89 papers.

0numbers the graph read from it
0cells of the map it votes in
89citing papers in PubMed
9.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

89 citing papers in PubMed, 148 citations in OpenAlex.

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  16. Life science alliance · 2024
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29 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 2 countries.

Yun Jin PaiBirth Defects Research Centre and Developmental Biology &Cancer Programme, Institute of Child Health, University College London, London WC1N 1EH, UK.
Kit-Yi LeungBirth Defects Research Centre and Developmental Biology &Cancer Programme, Institute of Child Health, University College London, London WC1N 1EH, UK.
Dawn SaveryBirth Defects Research Centre and Developmental Biology &Cancer Programme, Institute of Child Health, University College London, London WC1N 1EH, UK.
Tim HutchinNewborn Screening and Biochemical Genetics, Birmingham Children's Hospital, Birmingham B4 6NH, UK.
Helen Prunty1] Birth Defects Research Centre and Developmental Biology &Cancer Programme, Institute of Child Health, University College London, London WC1N 1EH, UK [2] Department of Chemical Pathology, Institute of Child Health, University College London, Great Ormond Street Hospital for Children NHS Foundation Trust, London WC1N 3JH, UK.
Simon Heales1] Birth Defects Research Centre and Developmental Biology &Cancer Programme, Institute of Child Health, University College London, London WC1N 1EH, UK [2] Department of Chemical Pathology, Institute of Child Health, University College London, Great Ormond Street Hospital for Children NHS Foundation Trust, London WC1N 3JH, UK.
Margaret E BrosnanDepartment of Biochemistry, Memorial University of Newfoundland, St John's, Newfoundland and Labrador, Canada A1B3X9.
John T BrosnanDepartment of Biochemistry, Memorial University of Newfoundland, St John's, Newfoundland and Labrador, Canada A1B3X9.
Andrew J CoppBirth Defects Research Centre and Developmental Biology &Cancer Programme, Institute of Child Health, University College London, London WC1N 1EH, UK.
Nicholas D E GreeneBirth Defects Research Centre and Developmental Biology &Cancer Programme, Institute of Child Health, University College London, London WC1N 1EH, UK.
University College London · GBMemorial University of Newfoundland · CABirmingham Children's Hospital · GB

Funding

Medical Research Council G0801124Medical Research Council J003794Medical Research Council MR/J003794/1Wellcome Trust 087525
6 · The paper itself

Abstract

Glycine decarboxylase (GLDC) acts in the glycine cleavage system to decarboxylate glycine and transfer a one-carbon unit into folate one-carbon metabolism. GLDC mutations cause a rare recessive disease non-ketotic hyperglycinemia (NKH). Mutations have also been identified in patients with neural tube defects (NTDs); however, the relationship between NKH and NTDs is unclear. We show that reduced expression of Gldc in mice suppresses glycine cleavage system activity and causes two distinct disease phenotypes. Mutant embryos develop partially penetrant NTDs while surviving mice exhibit post-natal features of NKH including glycine accumulation, early lethality and hydrocephalus. In addition to elevated glycine, Gldc disruption also results in abnormal tissue folate profiles, with depletion of one-carbon-carrying folates, as well as growth retardation and reduced cellular proliferation. Formate treatment normalizes the folate profile, restores embryonic growth and prevents NTDs, suggesting that Gldc deficiency causes NTDs through limiting supply of one-carbon units from mitochondrial folate metabolism.

Indexed as

AnimalsBase SequenceDNA PrimersFolic AcidFormatesGalactosidesGas Chromatography-Mass SpectrometryGenotypeGlycineGlycine Dehydrogenase (Decarboxylating)Hyperglycinemia, NonketoticImmunohistochemistryIndolesIn Situ HybridizationMiceMolecular Sequence Data5-bromo-4-chloro-3-indolyl beta-galactosideDNA PrimersFolic AcidFormatesformic acidGalactosidesGlycineGlycine Dehydrogenase (Decarboxylating)Indoles

Identifiers

PMID25736695
PMCPMC4366506
OpenAlexW2056974877

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.