Evidence map›Paper›PMID 25736209›Full record

ArticlePlant physiology2015

Proteomic analysis of lettuce seed germination and thermoinhibition by sampling of individual seeds at germination and removal of storage proteins by polyethylene glycol fractionation.

Wei-Qing Wang, Bin-Yan Song, Zhi-Jun Deng, Yue Wang, Shu-Jun Liu, Ian Max Møller, Song-Quan Song

Open access · greenAbstract readComparative Study
In one paragraph

Article in Plant physiology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
5.7field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 26 citations in OpenAlex.

  1. Changes inFrontiers in plant science · 2023
    Article
  2. Temperature Regulation of Primary and Secondary Seed Dormancy inInternational journal of molecular sciences · 2020
    Article
  3. Article
  4. Distinct Metabolome Changes during Seed Germination of Lettuce (International journal of molecular sciences · 2020
    Article
  5. Article
  6. Article
  7. Review
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 2 countries.

Wei-Qing WangKey Laboratory of Plant Resources and Beijing Botanical Garden, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China (W.-Q.W., B.-Y.S., Z.-J.D., Y.W., S.-J.L., S.-Q.S.);College of Biology Resources and Environmental Sciences, Jishou University, Jishou 416000, China (B.-Y.S.);College of Forestry and Horticulture, Hubei Minzu University, Enshi 445000, China (Z.-J.D.); andDepartment of Molecular Biology and Genetics, Aarhus University, Flakkebjerg, DK-4200 Slagelse, Denmark (I.M.M.).ORCID http://orcid.org/0000-0003-0174-9905
Bin-Yan SongKey Laboratory of Plant Resources and Beijing Botanical Garden, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China (W.-Q.W., B.-Y.S., Z.-J.D., Y.W., S.-J.L., S.-Q.S.);College of Biology Resources and Environmental Sciences, Jishou University, Jishou 416000, China (B.-Y.S.);College of Forestry and Horticulture, Hubei Minzu University, Enshi 445000, China (Z.-J.D.); andDepartment of Molecular Biology and Genetics, Aarhus University, Flakkebjerg, DK-4200 Slagelse, Denmark (I.M.M.).
Zhi-Jun DengKey Laboratory of Plant Resources and Beijing Botanical Garden, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China (W.-Q.W., B.-Y.S., Z.-J.D., Y.W., S.-J.L., S.-Q.S.);College of Biology Resources and Environmental Sciences, Jishou University, Jishou 416000, China (B.-Y.S.);College of Forestry and Horticulture, Hubei Minzu University, Enshi 445000, China (Z.-J.D.); andDepartment of Molecular Biology and Genetics, Aarhus University, Flakkebjerg, DK-4200 Slagelse, Denmark (I.M.M.).
Yue WangKey Laboratory of Plant Resources and Beijing Botanical Garden, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China (W.-Q.W., B.-Y.S., Z.-J.D., Y.W., S.-J.L., S.-Q.S.);College of Biology Resources and Environmental Sciences, Jishou University, Jishou 416000, China (B.-Y.S.);College of Forestry and Horticulture, Hubei Minzu University, Enshi 445000, China (Z.-J.D.); andDepartment of Molecular Biology and Genetics, Aarhus University, Flakkebjerg, DK-4200 Slagelse, Denmark (I.M.M.).
Shu-Jun LiuKey Laboratory of Plant Resources and Beijing Botanical Garden, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China (W.-Q.W., B.-Y.S., Z.-J.D., Y.W., S.-J.L., S.-Q.S.);College of Biology Resources and Environmental Sciences, Jishou University, Jishou 416000, China (B.-Y.S.);College of Forestry and Horticulture, Hubei Minzu University, Enshi 445000, China (Z.-J.D.); andDepartment of Molecular Biology and Genetics, Aarhus University, Flakkebjerg, DK-4200 Slagelse, Denmark (I.M.M.).
Ian Max MøllerKey Laboratory of Plant Resources and Beijing Botanical Garden, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China (W.-Q.W., B.-Y.S., Z.-J.D., Y.W., S.-J.L., S.-Q.S.);College of Biology Resources and Environmental Sciences, Jishou University, Jishou 416000, China (B.-Y.S.);College of Forestry and Horticulture, Hubei Minzu University, Enshi 445000, China (Z.-J.D.); andDepartment of Molecular Biology and Genetics, Aarhus University, Flakkebjerg, DK-4200 Slagelse, Denmark (I.M.M.).
Song-Quan SongKey Laboratory of Plant Resources and Beijing Botanical Garden, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China (W.-Q.W., B.-Y.S., Z.-J.D., Y.W., S.-J.L., S.-Q.S.);College of Biology Resources and Environmental Sciences, Jishou University, Jishou 416000, China (B.-Y.S.);College of Forestry and Horticulture, Hubei Minzu University, Enshi 445000, China (Z.-J.D.); andDepartment of Molecular Biology and Genetics, Aarhus University, Flakkebjerg, DK-4200 Slagelse, Denmark (I.M.M.) sqsong@ibcas.ac.cn.
Beijing Botanical Garden · CNAarhus University · DKJishou University · CNMinzu University of China · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Germination and thermoinhibition in lettuce (Lactuca sativa 'Jianyexianfeng No. 1') seeds were investigated by a proteomic comparison among dry seeds, germinated seeds at 15°C, at 15°C after imbibition at 25°C for 48 h, or at 25°C in KNO3 (all sampled individually at germination), and ungerminated seeds at 25°C, a thermoinhibitory temperature. Before two-dimensional gel electrophoresis analysis, storage proteins (greater than 50% of total extractable protein) were removed by polyethylene glycol precipitation, which significantly improved the detection of less abundant proteins on two-dimensional gels. A total of 108 protein spots were identified to change more than 2-fold (P<0.05) in abundance in at least one germination treatment. Nineteen proteins increasing and one protein decreasing in abundance during germination had higher abundance in germinated 15°C, 15°C after imbibition at 25°C for 48 h, and 25°C in KNO3 seeds than in ungerminated 25°C seeds. Gene expression of 12 of those proteins correlated well with the protein accumulation. Methionine metabolism, ethylene production, lipid mobilization, cell elongation, and detoxification of aldehydes were revealed to be potentially related to lettuce seed germination and thermoinhibition. Accumulation of three proteins and expression of five genes participating in the mevalonate (MVA) pathway of isoprenoid biosynthesis correlated positively with seed germinability. Inhibition of this pathway by lovastatin delayed seed germination and increased the sensitivity of germination to abscisic acid. MVA pathway-derived products, cytokinins, partially reversed the lovastatin inhibition of germination and released seed thermoinhibition at 25°C. We conclude that the MVA pathway for isoprenoid biosynthesis is involved in lettuce seed germination and thermoinhibition.

Indexed as

Gene Expression Regulation, PlantProteomicsAbscisic AcidBiosynthetic PathwaysChemical FractionationEthylenesGerminationLactucaMevalonic AcidPlant Growth RegulatorsPlant ProteinsPolyethylene GlycolsSeedsSeed Storage ProteinsTemperatureTerpenesAbscisic AcidethyleneEthylenesMevalonic AcidPlant Growth RegulatorsPlant ProteinsPolyethylene GlycolsSeed Storage ProteinsTerpenes

Identifiers

PMID25736209
PMCPMC4378177
OpenAlexW2141518360

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.