Evidence map›Paper›PMID 25735755›Full record

ArticleJournal of cellular biochemistry2015

Lyar Is a New Ligand for Retinal Pigment Epithelial Phagocytosis.

Feiye Guo, Ying Ding, Nora B Caberoy, Gabriela Alvarado, Robert Liu, Chen Shen, Jisu Yu, Yixiong Zhou, Enrique Salero, Michelle E LeBlanc and 2 more

Abstract read
In one paragraph

Article in Journal of cellular biochemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Feiye GuoBascom Palmer Eye Institute, Department of Ophthalmology, University of Miami School of Medicine, Miami, Florida, 33136.
Ying DingBascom Palmer Eye Institute, Department of Ophthalmology, University of Miami School of Medicine, Miami, Florida, 33136.
Nora B CaberoySchool of Life Sciences, University of Nevada Las Vegas, Las Vegas, Nevada, 89154.
Gabriela AlvaradoBascom Palmer Eye Institute, Department of Ophthalmology, University of Miami School of Medicine, Miami, Florida, 33136.
Robert LiuBascom Palmer Eye Institute, Department of Ophthalmology, University of Miami School of Medicine, Miami, Florida, 33136.
Chen ShenBascom Palmer Eye Institute, Department of Ophthalmology, University of Miami School of Medicine, Miami, Florida, 33136.
Jisu YuBascom Palmer Eye Institute, Department of Ophthalmology, University of Miami School of Medicine, Miami, Florida, 33136.
Yixiong ZhouDepartment of Ophthalmology, Ninth People's Hospital, Shanghai Jiaotong University School of Medicine, 200011, Shanghai, China.
Enrique SaleroBascom Palmer Eye Institute, Department of Ophthalmology, University of Miami School of Medicine, Miami, Florida, 33136.
Michelle E LeBlancBascom Palmer Eye Institute, Department of Ophthalmology, University of Miami School of Medicine, Miami, Florida, 33136.
Weiwen WangBascom Palmer Eye Institute, Department of Ophthalmology, University of Miami School of Medicine, Miami, Florida, 33136.
Wei LiBascom Palmer Eye Institute, Department of Ophthalmology, University of Miami School of Medicine, Miami, Florida, 33136.

Funding

Shared Equipment ModuleP30EY014801 · NEI · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI Dmitry V Ivanov · 2004 to 2026
$12.2M
PROFILING AUTOANTIGENS IN UVEITISR01EY016211 · NEI · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI LI, WEI · 2005 to 2010
$1.8M
Elucidation of Tubby and Tulp 1 Mechanisms by Comparitive Functional ProteomicsR01GM094449 · NIGMS · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI LI, WEI · 2011 to 2014
$1.1M
Molecular Mechanisms of Tubby and Tulp1 Mediated RPE PhagocytosisR00EY020865 · NEI · UNIVERSITY OF NEVADA LAS VEGAS · PI CABEROY, NORA BLANCA · 2012 to 2014
$730k
Unraveling the Mystery of Molecular Phagocyte Biology for MicrogliaR21HD075372 · NICHD · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI LI, WEI · 2012 to 2013
$411k
Molecular Mechanisms of Tubby and Tulp1 Mediated RPE PhagocytosisK99EY020865 · NEI · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI CABEROY, NORA BLANCA · 2011 to 2011
$90k
NEI NIH HHS K99 EY020865NEI NIH HHS K99EY020865NEI NIH HHS P30 EY014801NEI NIH HHS P30-EY014801NEI NIH HHS R00 EY020865NEI NIH HHS R00EY020865NEI NIH HHS R01 EY016211NEI NIH HHS R01EY016211-05S1NICHD NIH HHS R21 HD075372NICHD NIH HHS R21HD075372NIGMS NIH HHS R01 GM094449NIGMS NIH HHS R01GM094449
6 · The paper itself

Abstract

Phagocytosis is critical to tissue homeostasis, as highlighted by phagocytosis defect of retinal pigment epithelial (RPE) cells with debris accumulation, photoreceptor degeneration and blindness. Phagocytosis ligands are the key to delineating molecular mechanisms and functional roles of phagocytes, but are traditionally identified in individual cases with technical challenges. We recently developed open reading frame phage display (OPD) for phagocytosis-based functional cloning (PFC) to identify unknown ligands. One of the identified ligands was Ly-1 antibody reactive clone (Lyar) with functions poorly defined. Herein, we characterized Lyar as a new ligand to stimulate RPE phagocytosis. In contrast to its reported nucleolar expression, immunohistochemistry showed that Lyar was highly expressed in photoreceptor outer segments (POSs) of the retina. Cytoplasmic Lyar was released from apoptotic cells, and selectively bound to shed POSs and apoptotic cells, but not healthy cells. POS vesicles engulfed through Lyar-dependent pathway were targeted to phagosomes and colocalized with phagosome marker Rab7. These results suggest that Lyar is a genuine RPE phagocytosis ligand, which in turn supports the validity of OPD/PFC as the only available approach for unbiased identification of phagocytosis ligands with broad applicability to various phagocytes.

Indexed as

AnimalsApoptosisDNA-Binding ProteinsLigandsMiceNuclear ProteinsPhagocytesPhagocytosisrab7 GTP-Binding Proteinsrab GTP-Binding ProteinsRetinaRetinal Photoreceptor Cell Outer SegmentRetinal Pigment EpitheliumRetinal PigmentsDNA-Binding ProteinsLigandsLyar protein, mouseNuclear Proteinsrab7 GTP-Binding Proteinsrab7 GTP-binding proteins, mouserab GTP-Binding ProteinsRetinal PigmentsLY-1 ANTIBODY REACTIVE CLONELYARPHAGOCYTOSISPHAGOCYTOSIS LIGANDRETINAL PIGMENT EPITHELIAL CELLRPE

Identifiers

PMID25735755
PMCPMC6456362

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.