Evidence map›Paper›PMID 25734817›Full record

ArticlePloS one2015

A combined gene signature of hypoxia and notch pathway in human glioblastoma and its prognostic relevance.

Khushboo Irshad, Saroj Kant Mohapatra, Chitrangda Srivastava, Harshit Garg, Seema Mishra, Bhawana Dikshit, Chitra Sarkar, Deepak Gupta, Poodipedi Sarat Chandra, Parthaprasad Chattopadhyay and 2 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
2.9field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 62 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Review
  6. Review
  7. Notch signaling, hypoxia, and cancer.Frontiers in oncology · 2023
    Review
  8. PGK1 : An Essential Player in Modulating Tumor Metabolism.Methods in molecular biology (Clifton, N.J.) · 2022
    Article
  9. Article
  10. Article
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  13. Article
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  16. Review
  17. Article
  18. Article
  19. Review
  20. PGK1-mediated cancer progression and drug resistance.American journal of cancer research · 2019
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 1 country.

Khushboo IrshadDepartment of Biochemistry, All India Institute of Medical Sciences, New Delhi, India.
Saroj Kant MohapatraNational Institute of Biomedical Genomics, Kalyani, West Bengal, India.
Chitrangda SrivastavaDepartment of Biochemistry, All India Institute of Medical Sciences, New Delhi, India.
Harshit GargDepartment of Biochemistry, All India Institute of Medical Sciences, New Delhi, India.
Seema MishraDepartment of Biochemistry, School of Life Science, University of Hyderabad, Hyderabad, India.
Bhawana DikshitDepartment of Biochemistry, All India Institute of Medical Sciences, New Delhi, India.
Chitra SarkarDepartment of Pathology, All India Institute of Medical Sciences, New Delhi, India.
Deepak GuptaDepartment of Neurosurgery, All India Institute of Medical Sciences, New Delhi, India.
Poodipedi Sarat ChandraDepartment of Neurosurgery, All India Institute of Medical Sciences, New Delhi, India.
Parthaprasad ChattopadhyayDepartment of Biochemistry, All India Institute of Medical Sciences, New Delhi, India.
Subrata SinhaNational Brain Research Centre, Manesar, Gurgaon, Haryana, India.
Kunzang ChosdolDepartment of Biochemistry, All India Institute of Medical Sciences, New Delhi, India.
All India Institute of Medical Sciences · INNational Brain Research Centre · INNational Institute of Biomedical Genomics · INUniversity of Hyderabad · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Hypoxia is a hallmark of solid tumors including glioblastoma (GBM). Its synergism with Notch signaling promotes progression in different cancers. However, Notch signaling exhibits pleiotropic roles and the existing literature lacks a comprehensive understanding of its perturbations under hypoxia in GBM with respect to all components of the pathway. We identified the key molecular cluster(s) characteristic of the Notch pathway response in hypoxic GBM tumors and gliomaspheres. Expression of Notch and hypoxia genes was evaluated in primary human GBM tissues by q-PCR. Clustering and statistical analyses were applied to identify the combination of hypoxia markers correlated with upregulated Notch pathway components. We found well-segregated tumor-clusters representing high and low HIF-1α/PGK1-expressors which accounted for differential expression of Notch signaling genes. In combination, a five-hypoxia marker set (HIF-1α/PGK1/VEGF/CA9/OPN) was determined as the best predictor for induction of Notch1/Dll1/Hes1/Hes6/Hey1/Hey2. Similar Notch-axis genes were activated in gliomaspheres, but not monolayer cultures, under moderate/severe hypoxia (2%/0.2% O2). Preliminary evidence suggested inverse correlation between patient survival and increased expression of constituents of the hypoxia-Notch gene signature. Together, our findings delineated the Notch-axis maximally associated with hypoxia in resected GBM, which might be prognostically relevant. Its upregulation in hypoxia-exposed gliomaspheres signify them as a better in-vitro model for studying hypoxia-Notch interactions than monolayer cultures.

Indexed as

Basic Helix-Loop-Helix ProteinsBrain NeoplasmsCell HypoxiaCluster AnalysisGlioblastomaHomeodomain ProteinsHumansHypoxia-Inducible Factor 1, alpha SubunitKaplan-Meier EstimateOsteopontinPhosphoglycerate KinasePrincipal Component AnalysisPrognosisReal-Time Polymerase Chain ReactionReceptors, NotchSignal TransductionBasic Helix-Loop-Helix ProteinsHES1 protein, humanHomeodomain ProteinsHypoxia-Inducible Factor 1, alpha SubunitOsteopontinPGK1 protein, humanPhosphoglycerate KinaseReceptors, NotchTranscription Factor HES-1

Identifiers

PMID25734817
PMCPMC4348203
OpenAlexW2015100090

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.