ArticleNeural computation2015
Neuronal calcium wave propagation varies with changes in endoplasmic reticulum parameters: a computer model.
Article in Neural computation, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.
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Who cites it
16 citing papers in PubMed, 34 citations in OpenAlex.
- Calmodulin controls spatial and temporal specificity of calcium-induced calcium release.PLoS computational biology · 2026Article
- Vasodilatory Effect ofPlants (Basel, Switzerland) · 2025Article
- Computational neurosciences and quantitative systems pharmacology: a powerful combination for supporting drug development in neurodegenerative diseases.Journal of pharmacokinetics and pharmacodynamics · 2024Review
- Differential behaviors of calcium-induced calcium release in one dimensional dendrite by Nernst-Planck equation, cable model and pure diffusion model.Cognitive neurodynamics · 2024Article
- Compartment-specific tuning of dendritic feature selectivity by intracellular CaScience (New York, N.Y.) · 2022Article
- Efficient Simulation of 3D Reaction-Diffusion in Models of Neurons and Networks.Frontiers in neuroinformatics · 2022Article
- Endoplasmic Reticulum Calcium Pumps and Tumor Cell Differentiation.International journal of molecular sciences · 2020Review
- Review
- Load balancing for multi-threaded PDES of stochastic reaction-diffusion in neurons.Journal of simulation : JOS · 2017Article
- Multithreaded Stochastic PDES for Reactions and Diffusions in Neurons.ACM transactions on modeling and computer simulation : a publication of the Association for Computing Machinery · 2017Article
- Optimizing computer models of corticospinal neurons to replicate in vitro dynamics.Journal of neurophysiology · 2017Article
- Distinct current modules shape cellular dynamics in model neurons.Neuroscience · 2016Article
- Reproducibility in Computational Neuroscience Models and Simulations.IEEE transactions on bio-medical engineering · 2016Article
- Calcium regulation of HCN channels supports persistent activity in a multiscale model of neocortex.Neuroscience · 2016Article
- Multitarget Multiscale Simulation for Pharmacological Treatment of Dystonia in Motor Cortex.Frontiers in pharmacology · 2016Article
- Parallel Stochastic Discrete Event Simulation of Calcium Dynamics in Neuron.IEEE/ACM transactions on computational biology and bioinformaticsArticle
Corrections and comments
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Authors and funding
6 authors at 1 institution in 1 country.
Funding
Abstract
Calcium (Ca²⁺) waves provide a complement to neuronal electrical signaling, forming a key part of a neuron's second messenger system. We developed a reaction-diffusion model of an apical dendrite with diffusible inositol triphosphate (IP₃), diffusible Ca²⁺, IP₃ receptors (IP₃Rs), endoplasmic reticulum (ER) Ca²⁺ leak, and ER pump (SERCA) on ER. Ca²⁺ is released from ER stores via IP₃Rs upon binding of IP₃ and Ca²⁺. This results in Ca²⁺-induced-Ca²⁺-release (CICR) and increases Ca²⁺ spread. At least two modes of Ca²⁺ wave spread have been suggested: a continuous mode based on presumed relative homogeneity of ER within the cell and a pseudo-saltatory model where Ca²⁺ regeneration occurs at discrete points with diffusion between them. We compared the effects of three patterns of hypothesized IP₃R distribution: (1) continuous homogeneous ER, (2) hotspots with increased IP₃R density (IP₃R hotspots), and (3) areas of increased ER density (ER stacks). All three modes produced Ca²⁺ waves with velocities similar to those measured in vitro (approximately 50-90 μm /sec). Continuous ER showed high sensitivity to IP₃R density increases, with time to onset reduced and speed increased. Increases in SERCA density resulted in opposite effects. The measures were sensitive to changes in density and spacing of IP₃R hotspots and stacks. Increasing the apparent diffusion coefficient of Ca²⁺ substantially increased wave speed. An extended electrochemical model, including voltage-gated calcium channels and AMPA synapses, demonstrated that membrane priming via AMPA stimulation enhances subsequent Ca²⁺ wave amplitude and duration. Our modeling suggests that pharmacological targeting of IP₃Rs and SERCA could allow modulation of Ca²⁺ wave propagation in diseases where Ca²⁺ dysregulation has been implicated.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.