Evidence map›Paper›PMID 25734491›Full record

ArticleNature neuroscience2015

Single-cell analysis reveals transcriptional heterogeneity of neural progenitors in human cortex.

Matthew B Johnson, Peter P Wang, Kutay D Atabay, Elisabeth A Murphy, Ryan N Doan, Jonathan L Hecht, Christopher A Walsh

Abstract readComparative Study
In one paragraph

Article in Nature neuroscience, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 167 papers.

0numbers the graph read from it
0cells of the map it votes in
167citing papers in PubMed
13.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

167 citing papers in PubMed, 287 citations in OpenAlex.

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  19. Genetic Tracing of Progenitors from Embryo to Postnatal Brain.Methods in molecular biology (Clifton, N.J.) · 2025
    Article
  20. Article

107 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Matthew B Johnson1] Division of Genetics and Genomics, Boston Children's Hospital, Boston, Massachusetts, USA. [2] Manton Center for Orphan Disease Research, Boston Children's Hospital, Boston, Massachusetts, USA. [3] Howard Hughes Medical Institute, Boston Children's Hospital, Boston, Massachusetts, USA.
Peter P Wang1] Division of Genetics and Genomics, Boston Children's Hospital, Boston, Massachusetts, USA. [2] Manton Center for Orphan Disease Research, Boston Children's Hospital, Boston, Massachusetts, USA. [3] Howard Hughes Medical Institute, Boston Children's Hospital, Boston, Massachusetts, USA.
Kutay D Atabay1] Division of Genetics and Genomics, Boston Children's Hospital, Boston, Massachusetts, USA. [2] Manton Center for Orphan Disease Research, Boston Children's Hospital, Boston, Massachusetts, USA. [3] Howard Hughes Medical Institute, Boston Children's Hospital, Boston, Massachusetts, USA.
Elisabeth A Murphy1] Division of Genetics and Genomics, Boston Children's Hospital, Boston, Massachusetts, USA. [2] Manton Center for Orphan Disease Research, Boston Children's Hospital, Boston, Massachusetts, USA. [3] Howard Hughes Medical Institute, Boston Children's Hospital, Boston, Massachusetts, USA.
Ryan N Doan1] Division of Genetics and Genomics, Boston Children's Hospital, Boston, Massachusetts, USA. [2] Manton Center for Orphan Disease Research, Boston Children's Hospital, Boston, Massachusetts, USA. [3] Howard Hughes Medical Institute, Boston Children's Hospital, Boston, Massachusetts, USA.
Jonathan L Hecht1] Department of Pathology, Beth Israel Deaconess Medical Center, Boston, Massachusetts, USA. [2] Department of Pathology, Harvard Medical School, Boston, Massachusetts, USA.
Christopher A Walsh1] Division of Genetics and Genomics, Boston Children's Hospital, Boston, Massachusetts, USA. [2] Manton Center for Orphan Disease Research, Boston Children's Hospital, Boston, Massachusetts, USA. [3] Howard Hughes Medical Institute, Boston Children's Hospital, Boston, Massachusetts, USA. [4] Department of Pediatrics, Harvard Medical School, Boston, Massachusetts, USA. [5] Department of Neurology, Harvard Medical School, Boston, Massachusetts, USA. [6] Program in Medical and Population Genetics, Broad Institute of MIT and Harvard, Cambridge, Massachusetts, USA.
Boston Children's Hospital · USBeth Israel Deaconess Medical Center · US

Funding

SYNAPTIC MECHANISMS IN HIPPOCAMPAL EPILEPTOGENESISP30HD018655 · NICHD · CHILDREN'S HOSPITAL BOSTON · PI POMEROY, SCOTT LOREN · 1985 to 2015
$26.2M
Cell Identity Determination In Human Brain: Somatic Mutation and Cell LineageR01NS032457 · NINDS · BOSTON CHILDREN'S HOSPITAL · PI Alice Eunjung Lee, Christopher A. Walsh · 1995 to 2026
$12.7M
Orchestra: A high performance biomedical supercomputing collaborativeS10RR028832 · NCRR · HARVARD MEDICAL SCHOOL · PI DANUSER, GAUDENZ · 2010 to 2010
$3.7M
Howard Hughes Medical InstituteNCRR NIH HHS 1S10RR028832-01NCRR NIH HHS S10 RR028832NICHD NIH HHS P30 HD018655NICHD NIH HHS P30 HD18655NINDS NIH HHS R01 NS032457
6 · The paper itself

Abstract

The human cerebral cortex depends for its normal development and size on a precisely controlled balance between self-renewal and differentiation of diverse neural progenitor cells. Specialized progenitors that are common in humans but virtually absent in rodents, called outer radial glia (ORG), have been suggested to be crucial to the evolutionary expansion of the human cortex. We combined progenitor subtype-specific sorting with transcriptome-wide RNA sequencing to identify genes enriched in human ORG, which included targets of the transcription factor neurogenin and previously uncharacterized, evolutionarily dynamic long noncoding RNAs. Activating the neurogenin pathway in ferret progenitors promoted delamination and outward migration. Finally, single-cell transcriptional profiling in human, ferret and mouse revealed more cells coexpressing proneural neurogenin targets in human than in other species, suggesting greater neuronal lineage commitment and differentiation of self-renewing progenitors. Thus, we find that the abundance of human ORG is paralleled by increased transcriptional heterogeneity of cortical progenitors.

Indexed as

Gene Expression ProfilingSingle-Cell AnalysisTranscription, GeneticAnimalsBasic Helix-Loop-Helix ProteinsCerebral CortexEpendymoglial CellsFerretsGene Expression Regulation, DevelopmentalHumansMiceMolecular Sequence DataNerve Tissue ProteinsNeural Stem CellsRNA, Long NoncodingSequence AlignmentBasic Helix-Loop-Helix ProteinsNerve Tissue ProteinsRNA, Long Noncoding

Identifiers

PMID25734491
PMCPMC5568903
OpenAlexW2032321721

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.