Evidence map›Paper›PMID 25734131›Full record

ArticleOpen forum infectious diseases2014

Phylogenetic Clades 6 and 8 of Enterohemorrhagic Escherichia coli O157:H7 With Particular stx Subtypes are More Frequently Found in Isolates From Hemolytic Uremic Syndrome Patients Than From Asymptomatic Carriers.

Sunao Iyoda, Shannon D Manning, Kazuko Seto, Keiko Kimata, Junko Isobe, Yoshiki Etoh, Sachiko Ichihara, Yuji Migita, Kikuyo Ogata, Mikiko Honda and 60 more

Open access · goldAbstract read
In one paragraph

Article in Open forum infectious diseases, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed
3.1field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed, 53 citations in OpenAlex.

  1. Article
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  3. The diverse landscape of AB5-type toxins.Engineering microbiology · 2023
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  4. Genome-wide association study of hemolytic uremic syndrome causing Shiga toxin-producing Escherichia coli from Sweden, 1994-2018.European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology · 2023
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  11. ABToxins · 2022
    Review
  12. Article
  13. Genome structural variation inMicrobial genomics · 2021
    Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Article
  19. Genetic and Functional Analyses of Virulence Potential of anFrontiers in cellular and infection microbiology · 2020
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

70 authors at 15 institutions in 2 countries.

Sunao IyodaDepartment of Bacteriology I , National Institute of Infectious Diseases , Tokyo , Japan.
Shannon D ManningDepartment of Microbiology and Molecular Genetics , Michigan State University , East Lansing.
Kazuko SetoDivision of Bacteriology , Osaka Prefectural Institute of Public Health , Japan.
Keiko KimataDepartment of Bacteriology , Toyama Institute of Health , Japan.
Junko IsobeDepartment of Bacteriology , Toyama Institute of Health , Japan.
Yoshiki EtohFukuoka Institute of Health and Environmental Sciences , Japan.
Sachiko IchiharaFukuoka Institute of Health and Environmental Sciences , Japan.
Yuji MigitaNagasaki Prefectural Institute for Environmental Research and Public Health , Japan.
Kikuyo OgataOita Prefectural Institute of Health and Environment , Japan.
Mikiko HondaFukuoka City Institute for Hygiene and the Environment , Japan.
Tsutomu KubotaMicroorganism Section , Kitakyusyu City Institute of Environmental Sciences , Fukuoka , Japan.
Kimiko KawanoMiyazaki Prefectural Institute for Public Health and Environment , Japan.
Kazutoshi MatsumotoKumamoto Prefectural Meat Inspection Office , Japan.
Jun KudakaOkinawa Prefectural Institute of Health and Environment , Japan.
Norio AsaiKyoto Prefectural Institute of Public Health and Environment , Japan.
Junko YabataYamaguchi Prefectural Institute of Public Health and Environment , Japan.
Kiyoshi TominagaYamaguchi Prefectural Institute of Public Health and Environment , Japan.
Jun TerajimaDepartment of Bacteriology I , National Institute of Infectious Diseases , Tokyo , Japan ; Division of Microbiology , National Institute of Health Sciences , Tokyo , Japan.
Tomoko Morita-IshiharaDepartment of Bacteriology I , National Institute of Infectious Diseases , Tokyo , Japan.
Hidemasa IzumiyaDepartment of Bacteriology I , National Institute of Infectious Diseases , Tokyo , Japan.
Yoshitoshi OguraDepartment of Genomics and Bioenvironmental Science, Frontier Science Research Center , University of Miyazaki , Japan.
Takehito SaitohInfectious Disease Surveillance Center , National Institute of infectious Diseases , Tokyo , Japan.
Atsushi IguchiInterdisciplinary Research Organization , University of Miyazaki , Japan.
Hideki KobayashiNational Agriculture and Food Research Organization , National Institute of Animal Health , Ibaraki , Japan.
Yukiko Hara-KudoDivision of Microbiology , National Institute of Health Sciences , Tokyo , Japan.
Makoto OhnishiDepartment of Bacteriology I , National Institute of Infectious Diseases , Tokyo , Japan.
Reiko Arai
Masao Kawase
Yukiko Asano
Nanami Asoshima
Kazuki Chiba
Ichiro Furukawa
Toshiro Kuroki
Madoka Hamada
Seiya Harada
Takashi Hatakeyama
Takashi Hirochi
Yumiko Sakamoto
Midori Hiroi
Kanda Takashi
Kazumi Horikawa
Kaori Iwabuchi
Mitsuhiro Kameyama
Hitomi Kasahara
Shinya Kawanishi
Koji Kikuchi
Hiroyuki Ueno
Tomoko Kitahashi
Yuka Kojima
Noriko Konishi
Hiromi Obata
Akemi Kai
Tomomi Kono
Takayuki Kurazono
Masakado Matsumoto
Yuko Matsumoto
Yuhki Nagai
Hideki Naitoh
Hiroshi Nakajima
Hiromi Nakamura
Kunihiko Nakane
Keiko Nishi
Etsuko Saitoh
Hiroaki Satoh
Mitsuteru Takamura
Yutaka Shiraki
Junichi Tanabe
Keiko Tanaka
Yuki Tokoi
Jun Yatsuyanagi
National Institute of Infectious Diseases · JPFukuoka Institute of Health and Environmental Sciences · JPNational Institute of Health Sciences · JPToyama Institute of Health · JPUniversity of Miyazaki · JPYamagata Prefectural Institute of Public Health · JPFukuoka City Hospital · JPHyogo Prefectural Institute of Environmental Sciences · JPKyoto Prefectural Institute of Public Health and Environment · JPMichigan State University · USMiyazaki Prefectural Hospital · JPNational Institute of Animal Health · JPNational Institutes of Health · USOkinawa Prefectural Institute of Health and Environment · JPOsaka Prefectural Institute of Public Health · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundEnterohemorrhagic Escherichia coli (EHEC) O157:H7 infection causes severe diseases such as bloody diarrhea and hemolytic uremic syndrome (HUS). Although EHEC O157:H7 strains have exhibited high genetic variability, their abilities to cause human diseases have not been fully examined.

methodsClade typing and stx subtyping of EHEC O157:H7 strains, which were isolated in Japan during 1999-2011 from 269 HUS patients and 387 asymptomatic carriers (ACs) and showed distinct pulsed-field gel electrophoresis patterns, were performed to determine relationships between specific lineages and clinical presentation.

resultsClades 6 and 8 strains were more frequently found among the isolates from HUS cases than those from ACs (P = .00062 for clade 6, P < .0001 for clade 8). All clade 6 strains isolated from HUS patients harbored stx2a and/or stx2c, whereas all clade 8 strains harbored either stx2a or stx2a/stx2c. However, clade 7 strains were predominantly found among the AC isolates but less frequently found among the HUS isolates, suggesting a significant association between clade 7 and AC (P < .0001). Logistic regression analysis revealed that 0-9 year old age is a significant predictor of the association between clade 8 and HUS. We also found an intact norV gene, which encodes for a nitric oxide reductase that inhibits Shiga toxin activity under anaerobic condition, in all clades 1-3 isolates but not in clades 4-8 isolates.

conclusionsEarly detection of EHEC O157:H7 strains that belonged to clades 6/8 and harbored specific stx subtypes may be important for defining the risk of disease progression in EHEC-infected 0- to 9-year-old children.

Indexed as

cladeEHECHUSO157stx

Identifiers

PMID25734131
PMCPMC4281788
OpenAlexW2110162847

What OpenQuestion holds

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LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.