Evidence map›Paper›PMID 25734057›Full record

ArticleBioMed research international2015

Genome-wide methylome analyses reveal novel epigenetic regulation patterns in schizophrenia and bipolar disorder.

Yongsheng Li, Cynthia Camarillo, Juan Xu, Tania Bedard Arana, Yun Xiao, Zheng Zhao, Hong Chen, Mercedes Ramirez, Juan Zavala, Michael A Escamilla and 8 more

Abstract read
In one paragraph

Article in BioMed research international, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed, 2 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 2 syntheses or guidelines pooled it.

  1. Pooled it
  2. Pooled it
  3. Functional Genomics Studies of Psychiatric Disorders in Individuals of Latin American Populations: A Scoping Review.American journal of medical genetics. Part B, Neuropsychiatric genetics : the official publication of the International Society of Psychiatric Genetics · 2026
    Article
  4. Premature aging in serious mental illness.Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology · 2026
    Review
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  17. A Methionine-Induced Animal Model of Schizophrenia: Face and Predictive Validity.The international journal of neuropsychopharmacology · 2015
    Article
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors.

Yongsheng LiCollege of Bioinformatics Science and Technology, Harbin Medical University, Harbin 150086, China.
Cynthia CamarilloCenter of Excellence in Neuroscience and Department of Psychiatry, Paul L. Foster School of Medicine, Texas Tech University Health Science Center, El Paso, TX 79905, USA.
Juan XuCollege of Bioinformatics Science and Technology, Harbin Medical University, Harbin 150086, China.
Tania Bedard AranaDepartment of Pediatrics, Paul L. Foster School of Medicine, Texas Tech University Health Science Center, El Paso, TX 79905, USA.
Yun XiaoCollege of Bioinformatics Science and Technology, Harbin Medical University, Harbin 150086, China.
Zheng ZhaoCollege of Bioinformatics Science and Technology, Harbin Medical University, Harbin 150086, China.
Hong ChenCollege of Bioinformatics Science and Technology, Harbin Medical University, Harbin 150086, China.
Mercedes RamirezCenter of Excellence in Neuroscience and Department of Psychiatry, Paul L. Foster School of Medicine, Texas Tech University Health Science Center, El Paso, TX 79905, USA.
Juan ZavalaCenter of Excellence in Neuroscience and Department of Psychiatry, Paul L. Foster School of Medicine, Texas Tech University Health Science Center, El Paso, TX 79905, USA.
Michael A EscamillaCenter of Excellence in Neuroscience and Department of Psychiatry, Paul L. Foster School of Medicine, Texas Tech University Health Science Center, El Paso, TX 79905, USA.
Regina ArmasDepartment of Psychiatry, University of California at San Francisco, San Francisco, CA 94103, USA.
Ricardo MendozaLos Angeles Biomedical Research Center at Harbor, University of California Los Angeles Medical Center, Torrance, CA 90502, USA.
Alfonso OntiverosInstituto de Informacion de Investigacion en Salud Mental, 64710 Monterrey, NL, Mexico.
Humberto NicoliniMedical and Family Research Group, Carracci S.C., 03740 Mexico City, DF, Mexico.
Alvaro Antonio Jerez MagañaCentro Internacional de Trastornos Afectivos y de la Conducta Adictiva (CITACA), 01010 Guatemala City, Guatemala.
Lewis P RubinDepartment of Pediatrics, Paul L. Foster School of Medicine, Texas Tech University Health Science Center, El Paso, TX 79905, USA.
Xia LiCollege of Bioinformatics Science and Technology, Harbin Medical University, Harbin 150086, China.
Chun XuCollege of Bioinformatics Science and Technology, Harbin Medical University, Harbin 150086, China ; Department of Pediatrics, Paul L. Foster School of Medicine, Texas Tech University Health Science Center, El Paso, TX 79905, USA.

Funding

Genetics of Bipolar Disorder in Latino PopulationsR01MH069856 · NIMH · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI ESCAMILLA, MICHAEL A · 2005 to 2009
$6.5M
GENETICS OF SCHIZOPHRENIA IN LATINO POPULATIONSR01MH060881 · NIMH · UNIVERSITY OF TEXAS HLTH SCI CTR SAN ANT · PI ESCAMILLA, MICHAEL A · 2000 to 2003
$2.1M
GENETICS OF SCHIZOPHRENIA IN LATINO POPULATIONSR01MH060875 · NIMH · LA BIOMED RES INST/ HARBOR UCLA MED CTR · PI MENDOZA, RICARDO PATRICK · 2000 to 2003
$728k
NIMH NIH HHS R01 MH060875NIMH NIH HHS R01 MH060881NIMH NIH HHS R01 MH069856
6 · The paper itself

Abstract

Schizophrenia (SZ) and bipolar disorder (BP) are complex genetic disorders. Their appearance is also likely informed by as yet only partially described epigenetic contributions. Using a sequencing-based method for genome-wide analysis, we quantitatively compared the blood DNA methylation landscapes in SZ and BP subjects to control, both in an understudied population, Hispanics along the US-Mexico border. Remarkably, we identified thousands of differentially methylated regions for SZ and BP preferentially located in promoters 3'-UTRs and 5'-UTRs of genes. Distinct patterns of aberrant methylation of promoter sequences were located surrounding transcription start sites. In these instances, aberrant methylation occurred in CpG islands (CGIs) as well as in flanking regions as well as in CGI sparse promoters. Pathway analysis of genes displaying these distinct aberrant promoter methylation patterns showed enhancement of epigenetic changes in numerous genes previously related to psychiatric disorders and neurodevelopment. Integration of gene expression data further suggests that in SZ aberrant promoter methylation is significantly associated with altered gene transcription. In particular, we found significant associations between (1) promoter CGIs hypermethylation with gene repression and (2) CGI 3'-shore hypomethylation with increased gene expression. Finally, we constructed a specific methylation analysis platform that facilitates viewing and comparing aberrant genome methylation in human neuropsychiatric disorders.

Indexed as

AdultBipolar DisorderChromosome MappingDNA MethylationEpigenesis, GeneticFemaleGene Expression RegulationGenetic Predisposition to DiseaseGenome, HumanHumansMaleMiddle AgedSchizophreniaYoung Adult

Identifiers

PMID25734057
PMCPMC4334857

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.