Evidence map›Paper›PMID 25733890›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2015

Origin of the HIV-1 group O epidemic in western lowland gorillas.

Mirela D'arc, Ahidjo Ayouba, Amandine Esteban, Gerald H Learn, Vanina Boué, Florian Liegeois, Lucie Etienne, Nikki Tagg, Fabian H Leendertz, Christophe Boesch and 12 more

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 85 papers.

0numbers the graph read from it
0cells of the map it votes in
85citing papers in PubMed
11.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

85 citing papers in PubMed, 187 citations in OpenAlex.

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  8. Under the Radar: Immune Evasion, Pathogenesis and Control of HIV Infection.International journal of molecular sciences · 2025
    Review
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25 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors at 13 institutions in 10 countries.

Mirela D'arcUnité Mixte Internationale 233, Institut de Recherche pour le Développement, INSERM U1175, and University of Montpellier, 34394 Montpellier, France; Laboratory of Human Virology, Universidade Federal do Rio de Janeiro, 21949-570 Rio de Janeiro, Brazil;
Ahidjo AyoubaUnité Mixte Internationale 233, Institut de Recherche pour le Développement, INSERM U1175, and University of Montpellier, 34394 Montpellier, France;
Amandine EstebanUnité Mixte Internationale 233, Institut de Recherche pour le Développement, INSERM U1175, and University of Montpellier, 34394 Montpellier, France;
Gerald H LearnDepartments of Medicine and Microbiology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104;
Vanina BouéUnité Mixte Internationale 233, Institut de Recherche pour le Développement, INSERM U1175, and University of Montpellier, 34394 Montpellier, France; Centre International de Recherches Médicales, Franceville, Gabon;
Florian LiegeoisUnité Mixte Internationale 233, Institut de Recherche pour le Développement, INSERM U1175, and University of Montpellier, 34394 Montpellier, France; Centre International de Recherches Médicales, Franceville, Gabon;
Lucie EtienneUnité Mixte Internationale 233, Institut de Recherche pour le Développement, INSERM U1175, and University of Montpellier, 34394 Montpellier, France;
Nikki TaggProjet Grands Singes, Center for Research and Conservation, Royal Zoological Society of Antwerp, 2018 Antwerp, Belgium;
Fabian H LeendertzEpidemiology of Highly Pathogenic Microorganisms, Robert Koch Institute, 13353 Berlin, Germany;
Christophe BoeschDepartment of Primatology, Max Planck Institute for Evolutionary Anthropology, 04103 Leipzig, Germany;
Nadège F MadindaEpidemiology of Highly Pathogenic Microorganisms, Robert Koch Institute, 13353 Berlin, Germany; Department of Primatology, Max Planck Institute for Evolutionary Anthropology, 04103 Leipzig, Germany; Institut de Recherche en Ecologie Tropicale, Libreville, Gabon;
Martha M RobbinsDepartment of Primatology, Max Planck Institute for Evolutionary Anthropology, 04103 Leipzig, Germany;
Maryke GrayInternational Gorilla Conservation Programme, Kigali, Rwanda;
Amandine CournilUnité Mixte Internationale 233, Institut de Recherche pour le Développement, INSERM U1175, and University of Montpellier, 34394 Montpellier, France;
Marcel OomsDepartment of Microbiology, Global Health and Emerging Pathogens Institute, and.
Michael LetkoDepartment of Microbiology, Global Health and Emerging Pathogens Institute, and.
Viviana A SimonDepartment of Microbiology, Global Health and Emerging Pathogens Institute, and Division of Infectious Diseases, Department of Medicine, Icahn School of Medicine at Mount Sinai, New York, NY 10029;
Paul M SharpInstitute of Evolutionary Biology, and Center for Immunity, Infection, and Evolution, University of Edinburgh, Edinburgh EH9 3JT, United Kingdom;
Beatrice H HahnDepartments of Medicine and Microbiology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104; bhahn@upenn.edu martine.peeters@ird.fr.
Eric DelaporteUnité Mixte Internationale 233, Institut de Recherche pour le Développement, INSERM U1175, and University of Montpellier, 34394 Montpellier, France;
Eitel Mpoudi NgoleInstitut de Recherches Médicales et d'Études des Plantes Médicinales, Prévention du Sida au Cameroun, Yaoundé, Cameroon; and.
Martine PeetersUnité Mixte Internationale 233, Institut de Recherche pour le Développement, INSERM U1175, and University of Montpellier, 34394 Montpellier, France; Computational Biology Institute, 34095 Montpellier, France bhahn@upenn.edu martine.peeters@ird.fr.
Université de Montpellier · FRCzech Academy of Sciences, Institute of Microbiology · CZInserm · FRRobert Koch Institute · DEUniversity of Pennsylvania · USCentre International de Recherches Médicales de Franceville · GAInstitut de Recherche pour le Développement · FRInstitut de Recherches Médicales et d’Etudes des Plantes Médicinales · CMInternational Gorilla Conservation Programme · RWMax Planck Institute for Evolutionary Anthropology · DEMax Planck Society · DERoyal Zoological Society of Antwerp · BEUniversity of Edinburgh · GB

Funding

Virus & Reservoirs CoreP30AI045008 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI ROBERT GROSS · 1999 to 2026
$78.6M
STUDIES OF NATURAL SIV INFECTION OF SOOTY MANGABEYSR37AI066998 · NIAID · EMORY UNIVERSITY · PI SILVESTRI, GUIDO · 2011 to 2020
$7.7M
Molecular Epidemiology and Natural History of SIVcpzR01AI058715 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI HAHN, BEATRICE H · 2004 to 2013
$6.1M
Natural SIV Reservoirs and Human Zoonotic RiskR37AI050529 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI HAHN, BEATRICE H · 2008 to 2017
$5.7M
HIV Evolution Driven by Intracellular DefensesR01AI064001 · NIAID · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI SIMON, VIVIANA A · 2005 to 2015
$3.8M
Genomic Determinants of Intrinsic Antiviral Host DefensesR01AI089246 · NIAID · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI SIMON, VIVIANA A · 2010 to 2014
$2.1M
NIAID NIH HHS AI 089246NIAID NIH HHS P30 AI 045008NIAID NIH HHS P30 AI045008NIAID NIH HHS R01 AI 058715NIAID NIH HHS R01 AI058715NIAID NIH HHS R01 AI064001NIAID NIH HHS R01 AI089246NIAID NIH HHS R37 AI050529NIAID NIH HHS R37 AI 066998NIAID NIH HHS R37 AI066998NIAID NIH HHS R37 AI50529Wellcome Trust 095831
6 · The paper itself

Abstract

HIV-1, the cause of AIDS, is composed of four phylogenetic lineages, groups M, N, O, and P, each of which resulted from an independent cross-species transmission event of simian immunodeficiency viruses (SIVs) infecting African apes. Although groups M and N have been traced to geographically distinct chimpanzee communities in southern Cameroon, the reservoirs of groups O and P remain unknown. Here, we screened fecal samples from western lowland (n = 2,611), eastern lowland (n = 103), and mountain (n = 218) gorillas for gorilla SIV (SIVgor) antibodies and nucleic acids. Despite testing wild troops throughout southern Cameroon (n = 14), northern Gabon (n = 16), the Democratic Republic of Congo (n = 2), and Uganda (n = 1), SIVgor was identified at only four sites in southern Cameroon, with prevalences ranging from 0.8-22%. Amplification of partial and full-length SIVgor sequences revealed extensive genetic diversity, but all SIVgor strains were derived from a single lineage within the chimpanzee SIV (SIVcpz) radiation. Two fully sequenced gorilla viruses from southwestern Cameroon were very closely related to, and likely represent the source population of, HIV-1 group P. Most of the genome of a third SIVgor strain, from central Cameroon, was very closely related to HIV-1 group O, again pointing to gorillas as the immediate source. Functional analyses identified the cytidine deaminase APOBEC3G as a barrier for chimpanzee-to-gorilla, but not gorilla-to-human, virus transmission. These data indicate that HIV-1 group O, which spreads epidemically in west central Africa and is estimated to have infected around 100,000 people, originated by cross-species transmission from western lowland gorillas.

Indexed as

EpidemicsAnimalsAnimals, WildAntibodies, ViralBiological EvolutionCameroonCytidine DeaminaseFecesGenetic VariationGenomeGeographyGorilla gorillaHIV-1HumansMolecular Sequence DataPhylogenyAntibodies, ViralCytidine DeaminaseAIDSgorillaHIV-1SIVgorzoonotic transmission

Identifiers

PMID25733890
PMCPMC4371950
OpenAlexW2064142887

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.