Evidence map›Paper›PMID 25732537›Full record

ArticleJournal of experimental botany2015

Identification of cleavage sites and substrate proteins for two mitochondrial intermediate peptidases in Arabidopsis thaliana.

Chris Carrie, A Saskia Venne, René P Zahedi, Jürgen Soll

Open access · bronzeAbstract read
In one paragraph

Article in Journal of experimental botany, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
3.8field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 66 citations in OpenAlex.

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  12. LC-MS Based Draft Map of theFrontiers in plant science · 2021
    Article
  13. Plant expression of NifD protein variants resistant to mitochondrial degradation.Proceedings of the National Academy of Sciences of the United States of America · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Chris CarrieDepartment of Biology I, Botany, Ludwig-Maximilians Universität München, Großhaderner Strasse 2-4, D-82152 Planegg-Martinsried, Germany Carrie@lmu.de.
A Saskia VenneLeibniz-Institut für Analytische Wissenschaften - ISAS - e.V., Otto-Hahn-Str. 11, D-44139 Dortmund, Germany.
René P ZahediLeibniz-Institut für Analytische Wissenschaften - ISAS - e.V., Otto-Hahn-Str. 11, D-44139 Dortmund, Germany.
Jürgen SollDepartment of Biology I, Botany, Ludwig-Maximilians Universität München, Großhaderner Strasse 2-4, D-82152 Planegg-Martinsried, Germany Munich Centre for Integrated Protein Science, CiPSM, Ludwig-Maximilians Universität München, Feodor-Lynen-Strasse 25, D-81377 Munich, Germany.
Leibniz Institute for Analytical Sciences - ISAS · DELudwig-Maximilians-Universität München · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Most mitochondrial proteins contain an N-terminal targeting signal that is removed by specific proteases following import. In plant mitochondria, only mitochondrial processing peptidase (MPP) has been characterized to date. Therefore, we sought to determine the substrates and cleavage sites of the Arabidopsis thaliana homologues to the yeast Icp55 and Oct1 proteins, using the newly developed ChaFRADIC method for N-terminal protein sequencing. We identified 88 and seven putative substrates for Arabidopsis ICP55 and OCT1, respectively. It was determined that the Arabidopsis ICP55 contains an almost identical cleavage site to that of Icp55 from yeast. However, it can also remove a far greater range of amino acids. The OCT1 substrates from Arabidopsis displayed no consensus cleavage motif, and do not contain the classical -10R motif identified in other eukaryotes. Arabidopsis OCT1 can also cleave presequences independently, without the prior cleavage of MPP. It was concluded that while both OCT1 and ICP55 were probably acquired early on in the evolution of mitochondria, their substrate profiles and cleavage sites have either remained very similar or diverged completely.

Indexed as

ArabidopsisArabidopsis ProteinsBinding SitesGene Expression Regulation, PlantPeptide HydrolasesSubstrate SpecificityArabidopsis ProteinsPeptide Hydrolases–10R motif.ChaFRADIC methodIcp55mitochondrial processing peptidase (MPP)Oct1

Identifiers

PMID25732537
PMCPMC4986872
OpenAlexW2152537345

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.