Evidence map›Paper›PMID 25732252›Full record

ArticleToxicology and applied pharmacology2015

Developmental exposure to 2,3,7,8-tetrachlorodibenzo-p-dioxin alters DNA methyltransferase (dnmt) expression in zebrafish (Danio rerio).

Neelakanteswar Aluru, Elaine Kuo, Lily W Helfrich, Sibel I Karchner, Elwood A Linney, June E Pais, Diana G Franks

Abstract read
In one paragraph

Article in Toxicology and applied pharmacology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
4.4field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 68 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Exposure to 3,3',4,4',5-Pentachlorobiphenyl (PCB126) Causes Widespread DNA Hypomethylation in Adult Zebrafish Testis.Toxicological sciences : an official journal of the Society of Toxicology · 2022
    Article
  7. Article
  8. Article
  9. Article
  10. A Review of the Functional Roles of the Zebrafish Aryl Hydrocarbon Receptors.Toxicological sciences : an official journal of the Society of Toxicology · 2020
    Review
  11. Dioxin Disrupts Dynamic DNA Methylation Patterns in Genes That Govern Cardiomyocyte Maturation.Toxicological sciences : an official journal of the Society of Toxicology · 2020
    Article
  12. DuplicatedGenes · 2020
    Article
  13. Epigenetic Regulations of AhR in the Aspect of Immunomodulation.International journal of molecular sciences · 2020
    Review
  14. Article
  15. Article
  16. TCDD Toxicity Mediated by Epigenetic Mechanisms.International journal of molecular sciences · 2018
    Review
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 5 institutions in 1 country.

Neelakanteswar AluruBiology Department and Woods Hole Center for Oceans and Human Health, Woods Hole Oceanographic Institution, Woods Hole, MA 02543, USA. Electronic address: naluru@whoi.edu.
Elaine KuoBiology Department and Woods Hole Center for Oceans and Human Health, Woods Hole Oceanographic Institution, Woods Hole, MA 02543, USA; Stanford University, 450 Serra Mall, Stanford, CA 94305, USA.
Lily W HelfrichBiology Department and Woods Hole Center for Oceans and Human Health, Woods Hole Oceanographic Institution, Woods Hole, MA 02543, USA; Northwestern University, 633 Clark St, Evanston, IL 60208, USA.
Sibel I KarchnerBiology Department and Woods Hole Center for Oceans and Human Health, Woods Hole Oceanographic Institution, Woods Hole, MA 02543, USA.
Elwood A LinneyDepartment of Molecular Genetics and Microbiology, Duke University Medical Center, Box 3020, Durham, NC 27710, USA.
June E PaisNew England Biolabs, 240 County Road, Ipswich, MA 01938, USA.
Diana G FranksBiology Department and Woods Hole Center for Oceans and Human Health, Woods Hole Oceanographic Institution, Woods Hole, MA 02543, USA.
Woods Hole Oceanographic Institution · USDuke University Hospital · USNew England Biolabs (United States) · USNorthwestern University · USStanford University · US

Funding

WHCOHH: Harmful algal bloom dynamics and epigenetic mechanism of toxin actionP01ES021923 · NIEHS · WOODS HOLE OCEANOGRAPHIC INSTITUTION · PI STEGEMAN, JOHN J · 2012 to 2016
$2.1M
Role of de novo DNMTs in Toxicant Induced Alterations in DNA MethylationR01ES024915 · NIEHS · WOODS HOLE OCEANOGRAPHIC INSTITUTION · PI ALURU, NEELAKANTESWAR · 2015 to 2019
$2.1M
Phase I enzymes as part of an epigenetic switchR01GM099806 · NIGMS · DUKE UNIVERSITY · PI LINNEY, ELWOOD ALBERT · 2012 to 2014
$896k
NIEHS NIH HHS P01 ES021923NIEHS NIH HHS P01ES021923NIEHS NIH HHS R01 ES024915NIGMS NIH HHS GM099806NIGMS NIH HHS R01 GM099806
6 · The paper itself

Abstract

DNA methylation is one of the most important epigenetic modifications involved in the regulation of gene expression. The DNA methylation reaction is catalyzed by DNA methyltransferases (DNMTs). Recent studies have demonstrated that toxicants can affect normal development by altering DNA methylation patterns, but the mechanisms of action are poorly understood. Hence, we tested the hypothesis that developmental exposure to TCDD affects dnmt gene expression patterns. Zebrafish embryos were exposed to 5nM TCDD for 1h from 4 to 5h post-fertilization (hpf) and sampled at 12, 24, 48, 72, and 96 hpf to determine dnmt gene expression and DNA methylation patterns. We performed a detailed analysis of zebrafish dnmt gene expression during development and in adult tissues. Our results demonstrate that dnmt3b genes are highly expressed in early stages of development, and dnmt3a genes are more abundant in later stages. TCDD exposure upregulated dnmt1 and dnmt3b2 expression, whereas dnmt3a1, 3b1, and 3b4 are downregulated following exposure. We did not observe any TCDD-induced differences in global methylation or hydroxymethylation levels, but the promoter methylation of aryl hydrocarbon receptor (AHR) target genes was altered. In TCDD-exposed embryos, AHR repressor a (ahrra) and c-fos promoters were differentially methylated. To characterize the TCDD effects on DNMTs, we cloned the dnmt promoters with xenobiotic response elements and conducted AHR transactivation assays using a luciferase reporter system. Our results suggest that ahr2 can regulate dnmt3a1, dnmt3a2, and dnmt3b2 expression. Overall, we demonstrate that developmental exposure to TCDD alters dnmt expression and DNA methylation patterns.

Indexed as

AnimalsDNADNA MethylationDown-RegulationEmbryo, NonmammalianGene Expression Regulation, DevelopmentalMethyltransferasesPolychlorinated DibenzodioxinsPromoter Regions, GeneticReceptors, Aryl HydrocarbonResponse ElementsUp-RegulationZebrafishZebrafish ProteinsDNAMethyltransferasesPolychlorinated DibenzodioxinsReceptors, Aryl HydrocarbonZebrafish ProteinsAryl hydrocarbon receptorDioxinDNA methylationdnmtTCDDZebrafish development

Identifiers

PMID25732252
PMCPMC4408251
OpenAlexW1965948705

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.