Evidence map›Paper›PMID 25731751›Full record

ReviewCurrent opinion in biotechnology2015

A roadmap for interpreting (13)C metabolite labeling patterns from cells.

Joerg M Buescher, Maciek R Antoniewicz, Laszlo G Boros, Shawn C Burgess, Henri Brunengraber, Clary B Clish, Ralph J DeBerardinis, Olivier Feron, Christian Frezza, Bart Ghesquiere and 27 more

Abstract readReview
In one paragraph

Review in Current opinion in biotechnology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 367 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
367citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

367 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Isotopic tracing inVirulence · 2026
    Article
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  6. Review
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  10. Article
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  12. Article
  13. Article
  14. Review
  15. A Stable Isotope Tracing Primer for the Mass Spectrometrist.Annual review of analytical chemistry (Palo Alto, Calif.) · 2026
    Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article

307 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

37 authors.

Joerg M BuescherVesalius Research Center, VIB, Leuven, Belgium; Department of Oncology, KU Leuven, Leuven, Belgium.
Maciek R AntoniewiczDepartment of Chemical and Biomolecular Engineering, University of Delaware, Newark, DE, USA.
Laszlo G BorosDepartment of Pediatrics, UCLA School of Medicine, Los Angeles Biomedical Research Institute at the Harbor-UCLA Medical Center and Sidmap, LLC, Los Angeles, CA, USA.
Shawn C BurgessAdvanced Imaging Research Center-Division of Metabolic Mechanisms of Disease and Department of Pharmacology, The University of Texas Southwestern Medical Center, Dallas, TX, USA.
Henri BrunengraberDepartment of Nutrition, Case Western Reserve University School of Medicine, Cleveland, OH, USA.
Clary B ClishBroad Institute of Harvard and MIT, Cambridge, MA, USA.
Ralph J DeBerardinisChildren's Medical Center Research Institute, UT Southwestern Medical Center, Dallas, TX, USA.
Olivier FeronPole of Pharmacology and Therapeutics (FATH), Institut de Recherche Expérimentale et Clinique (IREC), Université catholique de Louvain, Brussels, Belgium.
Christian FrezzaMRC Cancer Unit, University of Cambridge, Hutchison/MRC Research Centre, Cambridge Biomedical Campus, Cambridge, UK.
Bart GhesquiereVesalius Research Center, VIB, Leuven, Belgium; Department of Oncology, KU Leuven, Leuven, Belgium.
Eyal GottliebCancer Research UK, Beatson Institute, Glasgow, UK.
Karsten HillerLuxembourg Centre for Systems Biomedicine, University of Luxembourg, Esch-Belval, Luxembourg.
Russell G JonesGoodman Cancer Research Centre, Department of Physiology, McGill University, Montreal, QC, Canada.
Jurre J KamphorstInstitute of Cancer Sciences, University of Glasgow, Glasgow, UK.
Richard G KibbeyInternal Medicine, Cellular and Molecular Physiology, Yale University School of Medicine, New Haven, CT, USA.
Alec C KimmelmanDivision of Genomic Stability and DNA Repair, Department of Radiation Oncology, Dana-Farber Cancer Institute, Boston, MA, USA.
Jason W LocasaleDivision of Nutritional Sciences, Cornell University, Ithaca, NY, USA.
Sophia Y LuntDepartment of Biochemistry and Molecular Biology, Michigan State University, East Lansing, MI, USA.
Oliver D K MaddocksCancer Research UK, Beatson Institute, Glasgow, UK.
Craig MalloyAdvanced Imaging Research Center-Division of Metabolic Mechanisms of Disease and Department of Radiology, The University of Texas Southwestern Medical Center, Dallas, TX, USA.
Christian M MetalloDepartment of Bioengineering, University of California, San Diego, La Jolla, CA, USA.
Emmanuelle J MeuilletL'Institut des Technologies Avancées en Sciences du Vivant (ITAV), Toulouse Cedex 1, France; The University of Arizona Cancer Center, and Department of Nutritional Sciences, The University of Arizona, Tucson, AZ, USA.
Joshua MungerDepartment of Biochemistry, University of Rochester Medical Center, Rochester, NY, USA; Department of Biophysics, University of Rochester Medical Center, Rochester, NY, USA.
Katharina NöhInstitute of Bio- and Geosciences, IBG-1: Biotechnology, Forschungszentrum Jülich GmbH, Jülich, Germany.
Joshua D RabinowitzDepartment of Chemistry and Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ, USA.
Markus RalserCambridge Systems Biology Centre and Department of Biochemistry, University of Cambridge, Cambridge, UK; Division of Physiology and Metabolism, MRC National Institute for Medical Research, London, UK.
Uwe SauerInstitute of Molecular Systems Biology, ETH Zurich, Zurich, Switzerland.
Gregory StephanopoulosDepartment of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, MA, USA.
Julie St-PierreGoodman Cancer Research Centre, and Department of Biochemistry, McGill University, Montreal, Quebec, Canada.
Daniel A TennantSchool of Cancer Sciences, College of Medical and Dental Sciences, University of Birmingham, Edgbaston, Birmingham, UK.
Christoph WittmannInstitute of Systems Biotechnology, Saarland University, Saarbrücken, Germany.
Matthew G Vander HeidenKoch Institute for Integrative Cancer Research at Massachusetts Institute of Technology, Broad Institute of Harvard and MIT, Cambridge, MA, USA; Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA.
Alexei VazquezCancer Research UK, Beatson Institute, Glasgow, UK.
Karen VousdenCancer Research UK, Beatson Institute, Glasgow, UK.
Jamey D YoungDepartment of Chemical and Biomolecular Engineering, Vanderbilt University, Nashville, TN, USA; Department of Molecular Physiology and Biophysics, Vanderbilt University, Nashville, TN, USA.
Nicola ZamboniInstitute of Molecular Systems Biology, ETH Zurich, Zurich, Switzerland.
Sarah-Maria FendtVesalius Research Center, VIB, Leuven, Belgium; Department of Oncology, KU Leuven, Leuven, Belgium. Electronic address: sarah-maria.fendt@vib-kuleuven.be.

Funding

Factors controlling metabolic flux in the liver - Supplement RevisionR01DK078184 · NIDDK · UT SOUTHWESTERN MEDICAL CENTER · PI Shawn C Burgess · 2008 to 2026
$6.8M
A Clinical MR Scanner for Imaging Hyperpolarized Carbon-13S10RR029119 · NCRR · UT SOUTHWESTERN MEDICAL CENTER · PI MALLOY, CRAIG R · 2011 to 2011
$2.2M
METABOLIC REGULATORS OF TUMOR CELL GROWTHR01CA157996 · NCI · UT SOUTHWESTERN MEDICAL CENTER · PI DEBERARDINIS, RALPH J · 2011 to 2017
$2.2M
The role of the mitochondrial GTP cycle in insulin secretionR01DK092606 · NIDDK · YALE UNIVERSITY · PI KIBBEY, RICHARD G · 2011 to 2015
$1.8M
Metabolic regulatory mechanisms essential for Human Cytomegalovirus replicationR01AI081773 · NIAID · UNIVERSITY OF ROCHESTER · PI MUNGER, JOSHUA C · 2010 to 2014
$1.7M
Hypoxia-induced Metabolic Changes in CancerR01CA160458 · NCI · MASSACHUSETTS GENERAL HOSPITAL · PI ILIOPOULOS, OTHON, STEPHANOPOULOS, GREGORY · 2012 to 2016
$1.6M
A Clinical Polarizer for Carbon-13 (SpinLab)S10OD018468 · OD · UT SOUTHWESTERN MEDICAL CENTER · PI MALLOY, CRAIG R · 2015 to 2015
$1.0M
Understanding metabolic flux and the control of mammalian cell growthR00CA168997 · NCI · DUKE UNIVERSITY · PI LOCASALE, JASON W. · 2013 to 2015
$695k
Metabolic regulatory mechanisms essential for Human Cytomegalovirus replicationR56AI081773 · NIAID · UNIVERSITY OF ROCHESTER · PI MUNGER, JOSHUA C · 2015 to 2015
$384k
Cancer Research UK 17728Cancer Research UK 18274Cancer Research UK 18278Cancer Research UK 19702Cancer Research UK 21140Medical Research Council MC_UP_1101/3Medical Research Council MC_UU_12022/6NCI NIH HHS R00 CA168997NCI NIH HHS R01 CA157996NCI NIH HHS R01 CA160458NCRR NIH HHS S10 RR029119NIAID NIH HHS R01 AI081773NIAID NIH HHS R56 AI081773NIDDK NIH HHS R01 DK078184NIDDK NIH HHS R01 DK092606
6 · The paper itself

Abstract

Measuring intracellular metabolism has increasingly led to important insights in biomedical research. (13)C tracer analysis, although less information-rich than quantitative (13)C flux analysis that requires computational data integration, has been established as a time-efficient method to unravel relative pathway activities, qualitative changes in pathway contributions, and nutrient contributions. Here, we review selected key issues in interpreting (13)C metabolite labeling patterns, with the goal of drawing accurate conclusions from steady state and dynamic stable isotopic tracer experiments.

Indexed as

Metabolic Networks and PathwaysAnimalsCarbon IsotopesCell SurvivalHumansIsotope LabelingCarbon Isotopes

Identifiers

PMID25731751
PMCPMC4552607

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.