Evidence map›Paper›PMID 25730866›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2015

In vitro reconstitution of indolmycin biosynthesis reveals the molecular basis of oxazolinone assembly.

Yi-Ling Du, Lona M Alkhalaf, Katherine S Ryan

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed.

  1. Review
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  3. Article
  4. AApplied and environmental microbiology · 2021
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  8. Review
  9. Article
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  12. Review
  13. Article
  14. Biosynthesis of antibiotic chuangxinmycin fromActa pharmaceutica Sinica. B · 2018
    Article
  15. Review
  16. A four-gene operon inThe Journal of biological chemistry · 2017
    Article
  17. Article
  18. Article
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Yi-Ling DuDepartment of Chemistry, University of British Columbia, Vancouver, BC V6T 1Z1, Canada.
Lona M AlkhalafDepartment of Chemistry, University of British Columbia, Vancouver, BC V6T 1Z1, Canada.
Katherine S RyanDepartment of Chemistry, University of British Columbia, Vancouver, BC V6T 1Z1, Canada ksryan@chem.ubc.ca.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The bacterial tryptophanyl-tRNA synthetase inhibitor indolmycin features a unique oxazolinone heterocycle whose biogenetic origins have remained obscure for over 50 years. Here we identify and characterize the indolmycin biosynthetic pathway, using systematic in vivo gene inactivation, in vitro biochemical assays, and total enzymatic synthesis. Our work reveals that a phenylacetate-CoA ligase-like enzyme Ind3 catalyzes an unusual ATP-dependent condensation of indolmycenic acid and dehydroarginine, driving oxazolinone ring assembly. We find that Ind6, which also has chaperone-like properties, acts as a gatekeeper to direct the outcome of this reaction. With Ind6 present, the normal pathway ensues. Without Ind6, the pathway derails to an unusual shunt product. Our work reveals the complete pathway for indolmycin formation and sets the stage for using genetic and chemoenzymatic methods to generate indolmycin derivatives as potential therapeutic agents.

Indexed as

Bacterial ProteinsBase SequenceCell-Free SystemCoenzyme A LigasesEscherichia coliIndolesMolecular ChaperonesMolecular Sequence DataOxazoloneRhodococcusStreptomyces griseusBacterial ProteinsCoenzyme A LigasesIndolesindolmycinMolecular ChaperonesOxazolonephenylacetate - CoA ligasetrifluoromethyloxazolinoneantibioticbiosynthesisindolmycin

Identifiers

PMID25730866
PMCPMC4352800

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.