Evidence map›Paper›PMID 25730763›Full record

ArticleNature genetics2015

Analysis of the genetic phylogeny of multifocal prostate cancer identifies multiple independent clonal expansions in neoplastic and morphologically normal prostate tissue.

Colin S Cooper, Rosalind Eeles, David C Wedge, Peter Van Loo, Gunes Gundem, Ludmil B Alexandrov, Barbara Kremeyer, Adam Butler, Andrew G Lynch, Niedzica Camacho and 62 more

Erratum issuedOpen access · greenAbstract read
In one paragraph

Article in Nature genetics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 252 papers.

0numbers the graph read from it
0cells of the map it votes in
252citing papers in PubMed
24.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

252 citing papers in PubMed, 454 citations in OpenAlex.

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192 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

72 authors at 11 institutions in 5 countries.

Colin S Cooper *Division of Genetics and Epidemiology, The Institute Of Cancer Research, London, UK.
Rosalind Eeles *Division of Genetics and Epidemiology, The Institute Of Cancer Research, London, UK.
David C Wedge *Cancer Genome Project, Wellcome Trust Sanger Institute, Hinxton, UK.
Peter Van Loo *Cancer Genome Project, Wellcome Trust Sanger Institute, Hinxton, UK.
Gunes GundemCancer Genome Project, Wellcome Trust Sanger Institute, Hinxton, UK.
Ludmil B AlexandrovCancer Genome Project, Wellcome Trust Sanger Institute, Hinxton, UK.
Barbara KremeyerCancer Genome Project, Wellcome Trust Sanger Institute, Hinxton, UK.
Adam ButlerCancer Genome Project, Wellcome Trust Sanger Institute, Hinxton, UK.
Andrew G LynchStatistics and Computational Biology Laboratory, Cancer Research UK Cambridge Research Institute, Cambridge, UK.
Niedzica CamachoDivision of Genetics and Epidemiology, The Institute Of Cancer Research, London, UK.
Charlie E MassieUrological Research Laboratory, Cancer Research UK Cambridge Research Institute, Cambridge, UK.
Jonathan KayUrological Research Laboratory, Cancer Research UK Cambridge Research Institute, Cambridge, UK.
Hayley J LuxtonUrological Research Laboratory, Cancer Research UK Cambridge Research Institute, Cambridge, UK.
Sandra EdwardsDivision of Genetics and Epidemiology, The Institute Of Cancer Research, London, UK.
ZSofia Kote-JaraiDivision of Genetics and Epidemiology, The Institute Of Cancer Research, London, UK.
Nening DennisRoyal Marsden NHS Foundation Trust, London and Sutton, UK.
Sue MersonDivision of Genetics and Epidemiology, The Institute Of Cancer Research, London, UK.
Daniel LeongamornlertDivision of Genetics and Epidemiology, The Institute Of Cancer Research, London, UK.
Jorge ZamoraCancer Genome Project, Wellcome Trust Sanger Institute, Hinxton, UK.
Cathy CorbishleyDepartment of Histopathology, St Georges Hospital, London, UK.
Sarah ThomasRoyal Marsden NHS Foundation Trust, London and Sutton, UK.
Serena Nik-ZainalCancer Genome Project, Wellcome Trust Sanger Institute, Hinxton, UK.
Sarah O'MearaCancer Genome Project, Wellcome Trust Sanger Institute, Hinxton, UK.
Lucy MatthewsDivision of Genetics and Epidemiology, The Institute Of Cancer Research, London, UK.
Jeremy ClarkNorwich Medical School, University of East Anglia, Norwich, UK.
Rachel HurstNorwich Medical School, University of East Anglia, Norwich, UK.
Richard MithenInstitute of Food Research, Norwich Research Park, Norwich, UK.
Robert G BristowDepartment of Medical Biophysics, University of Toronto, Toronto, Canada.
Paul C BoutrosDepartment of Medical Biophysics, University of Toronto, Toronto, Canada.
Michael FraserDepartment of Radiation Oncology, University of Toronto, Toronto, Canada.
Susanna CookeCancer Genome Project, Wellcome Trust Sanger Institute, Hinxton, UK.
Keiran RaineCancer Genome Project, Wellcome Trust Sanger Institute, Hinxton, UK.
David JonesCancer Genome Project, Wellcome Trust Sanger Institute, Hinxton, UK.
Andrew MenziesCancer Genome Project, Wellcome Trust Sanger Institute, Hinxton, UK.
Lucy StebbingsCancer Genome Project, Wellcome Trust Sanger Institute, Hinxton, UK.
Jon HintonCancer Genome Project, Wellcome Trust Sanger Institute, Hinxton, UK.
Jon TeagueCancer Genome Project, Wellcome Trust Sanger Institute, Hinxton, UK.
Stuart McLarenCancer Genome Project, Wellcome Trust Sanger Institute, Hinxton, UK.
Laura MudieCancer Genome Project, Wellcome Trust Sanger Institute, Hinxton, UK.
Claire HardyCancer Genome Project, Wellcome Trust Sanger Institute, Hinxton, UK.
Elizabeth AndersonCancer Genome Project, Wellcome Trust Sanger Institute, Hinxton, UK.
Olivia JosephCancer Genome Project, Wellcome Trust Sanger Institute, Hinxton, UK.
Victoria GoodyCancer Genome Project, Wellcome Trust Sanger Institute, Hinxton, UK.
Ben RobinsonCancer Genome Project, Wellcome Trust Sanger Institute, Hinxton, UK.
Mark MaddisonCancer Genome Project, Wellcome Trust Sanger Institute, Hinxton, UK.
Stephen GambleCancer Genome Project, Wellcome Trust Sanger Institute, Hinxton, UK.
Christopher GreenmanSchool of Computing Sciences, University of East Anglia, Norwich, UK.
Dan BerneyDepartment of Molecular Oncology, Barts Cancer Centre, Barts and the London School of Medicine and Dentistry, London, UK.
Steven HazellRoyal Marsden NHS Foundation Trust, London and Sutton, UK.
Naomi LivniRoyal Marsden NHS Foundation Trust, London and Sutton, UK.
ICGC Prostate Group
Cyril FisherRoyal Marsden NHS Foundation Trust, London and Sutton, UK.
Christopher OgdenRoyal Marsden NHS Foundation Trust, London and Sutton, UK.
Pardeep KumarRoyal Marsden NHS Foundation Trust, London and Sutton, UK.
Alan ThompsonRoyal Marsden NHS Foundation Trust, London and Sutton, UK.
Christopher WoodhouseRoyal Marsden NHS Foundation Trust, London and Sutton, UK.
David NicolRoyal Marsden NHS Foundation Trust, London and Sutton, UK.
Erik MayerRoyal Marsden NHS Foundation Trust, London and Sutton, UK.
Tim DudderidgeRoyal Marsden NHS Foundation Trust, London and Sutton, UK.
Nimish C ShahUrological Research Laboratory, Cancer Research UK Cambridge Research Institute, Cambridge, UK.
Vincent GnanapragasamUrological Research Laboratory, Cancer Research UK Cambridge Research Institute, Cambridge, UK.
Thierry VoetLaboratory of Reproductive Genomics, Department of Human Genetics, KU Leuven, Leuven, Belgium.
Peter CampbellCancer Genome Project, Wellcome Trust Sanger Institute, Hinxton, UK.
Andrew FutrealCancer Genome Project, Wellcome Trust Sanger Institute, Hinxton, UK.
Douglas EastonCentre for Cancer Genetic Epidemiology, Department of Oncology, University of Cambridge, Cambridge, UK.
Anne Y Warren *Department of Histopathology, Cambridge University Hospitals NHS Foundation Trust, Cambridge, UK.
Christopher S Foster *University of Liverpool, Liverpool, UK.
Michael R StrattonCancer Genome Project, Wellcome Trust Sanger Institute, Hinxton, UK.
Hayley C Whitaker *Urological Research Laboratory, Cancer Research UK Cambridge Research Institute, Cambridge, UK.
Ultan McDermott *Cancer Genome Project, Wellcome Trust Sanger Institute, Hinxton, UK.
Daniel S Brewer *Division of Genetics and Epidemiology, The Institute Of Cancer Research, London, UK.
David E Neal *Urological Research Laboratory, Cancer Research UK Cambridge Research Institute, Cambridge, UK.
Wellcome Sanger Institute · GBRoyal Marsden NHS Foundation Trust · GBCancer Research UK · GBUniversity of East Anglia · GBInstitute of Cancer Research · GBUniversity of Cambridge · GBSt George's Hospital · GBUniversity of Liverpool · GBUniversity of Toronto · CAOntario Institute for Cancer Research · CAUniversity Health Network · CA

Funding

Cancer Research UK 14835Cancer Research UK 15007Cancer Research UK 17528Cancer Research UK 20406Cancer Research UK A12758Cancer Research UK C5047/A14835Wellcome Trust
6 · The paper itself

Abstract

Genome-wide DNA sequencing was used to decrypt the phylogeny of multiple samples from distinct areas of cancer and morphologically normal tissue taken from the prostates of three men. Mutations were present at high levels in morphologically normal tissue distant from the cancer, reflecting clonal expansions, and the underlying mutational processes at work in morphologically normal tissue were also at work in cancer. Our observations demonstrate the existence of ongoing abnormal mutational processes, consistent with field effects, underlying carcinogenesis. This mechanism gives rise to extensive branching evolution and cancer clone mixing, as exemplified by the coexistence of multiple cancer lineages harboring distinct ERG fusions within a single cancer nodule. Subsets of mutations were shared either by morphologically normal and malignant tissues or between different ERG lineages, indicating earlier or separate clonal cell expansions. Our observations inform on the origin of multifocal disease and have implications for prostate cancer therapy in individual cases.

Indexed as

DNA Mutational AnalysisCase-Control StudiesCell LineageClonal EvolutionClone CellsHumansMaleMutationNeoplasms, Multiple PrimaryPhylogenyProstateProstatic Neoplasms

Identifiers

PMID25730763
PMCPMC4380509
OpenAlexW2100024496

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.