Evidence map›Paper›PMID 25729925›Full record

ArticleNature immunology2015

IL-7 coordinates proliferation, differentiation and Tcra recombination during thymocyte β-selection.

Amine Boudil, Irina R Matei, Han-Yu Shih, Goce Bogdanoski, Julie S Yuan, Stephen G Chang, Bertrand Montpellier, Paul E Kowalski, Veronique Voisin, Shaheena Bashir and 3 more

Open access · greenAbstract read
In one paragraph

Article in Nature immunology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 71 papers.

0numbers the graph read from it
0cells of the map it votes in
71citing papers in PubMed
4.7field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

71 citing papers in PubMed, 111 citations in OpenAlex.

  1. Trial
  2. Article
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  5. Review
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  7. Article
  8. Inactivation of GSK3β by SerCell death and differentiation · 2025
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  10. Food for thought: Nutrient metabolism controlling early T cell development.BioEssays : news and reviews in molecular, cellular and developmental biology · 2025
    Review
  11. Review
  12. Article
  13. Article
  14. Review
  15. Article
  16. Notch Partners in the Long Journey of T-ALL Pathogenesis.International journal of molecular sciences · 2023
    Review
  17. Article
  18. Review
  19. Review
  20. Article

11 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

13 authors at 3 institutions in 2 countries.

Amine Boudil1] Program in Developmental and Stem Cell Biology, Hospital for Sick Children Research Institute, Toronto, Canada. [2] Department of Immunology, University of Toronto, Toronto, Canada.
Irina R MateiProgram in Developmental and Stem Cell Biology, Hospital for Sick Children Research Institute, Toronto, Canada.
Han-Yu ShihDepartment of Immunology, Duke University Medical Center, Durham, North Carolina, USA.
Goce BogdanoskiProgram in Developmental and Stem Cell Biology, Hospital for Sick Children Research Institute, Toronto, Canada.
Julie S YuanProgram in Developmental and Stem Cell Biology, Hospital for Sick Children Research Institute, Toronto, Canada.
Stephen G ChangProgram in Developmental and Stem Cell Biology, Hospital for Sick Children Research Institute, Toronto, Canada.
Bertrand Montpellier1] Program in Developmental and Stem Cell Biology, Hospital for Sick Children Research Institute, Toronto, Canada. [2] Department of Immunology, University of Toronto, Toronto, Canada.
Paul E KowalskiProgram in Developmental and Stem Cell Biology, Hospital for Sick Children Research Institute, Toronto, Canada.
Veronique VoisinThe Donnelly Centre, University of Toronto, Toronto, Canada.
Shaheena BashirThe Donnelly Centre, University of Toronto, Toronto, Canada.
Gary D Bader1] The Donnelly Centre, University of Toronto, Toronto, Canada. [2] Department of Molecular Genetics, University of Toronto, Toronto, Canada.ORCID 0000000301858861
Michael S KrangelDepartment of Immunology, Duke University Medical Center, Durham, North Carolina, USA.
Cynthia J Guidos1] Program in Developmental and Stem Cell Biology, Hospital for Sick Children Research Institute, Toronto, Canada. [2] Department of Immunology, University of Toronto, Toronto, Canada.ORCID 0000000276742612
University of Toronto · CAHospital for Sick Children · CADuke Medical Center · US

Funding

TR&D 3 - Network Guided Machine LearningP41GM103504 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI IDEKER, TREY · 2012 to 2024
$17.3M
Knowledge-based Gene Expression Analysis for Biomedical and Cancer ResearchR01CA121941 · NCI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI MESIROV, JILL P. · 2006 to 2016
$5.1M
Control Of Tcr Delta And Tcr Alpha RearrangementR37GM041052 · NIGMS · DUKE UNIVERSITY · PI KRANGEL, MICHAEL S · 2006 to 2015
$5.1M
Canadian Institutes of Health Research FRN 11530NCI NIH HHS R01 CA121941NIGMS NIH HHS P41 GM103504NIGMS NIH HHS R37 GM041052NIGMS NIH HHS R37 GM41052
6 · The paper itself

Abstract

Signaling via the pre-T cell antigen receptor (pre-TCR) and the receptor Notch1 induces transient self-renewal (β-selection) of TCRβ(+) CD4(-)CD8(-) double-negative stage 3 (DN3) and DN4 progenitor cells that differentiate into CD4(+)CD8(+) double-positive (DP) thymocytes, which then rearrange the locus encoding the TCR α-chain (Tcra). Interleukin 7 (IL-7) promotes the survival of TCRβ(-) DN thymocytes by inducing expression of the pro-survival molecule Bcl-2, but the functions of IL-7 during β-selection have remained unclear. Here we found that IL-7 signaled TCRβ(+) DN3 and DN4 thymocytes to upregulate genes encoding molecules involved in cell growth and repressed the gene encoding the transcriptional repressor Bcl-6. Accordingly, IL-7-deficient DN4 cells lacked trophic receptors and did not proliferate but rearranged Tcra prematurely and differentiated rapidly. Deletion of Bcl6 partially restored the self-renewal of DN4 cells in the absence of IL-7, but overexpression of BCL2 did not. Thus, IL-7 critically acts cooperatively with signaling via the pre-TCR and Notch1 to coordinate proliferation, differentiation and Tcra recombination during β-selection.

Indexed as

AnimalsCD4 AntigensCD8 AntigensCell DifferentiationCell ProliferationCell SurvivalGene Expression RegulationInterleukin-7MiceMice, Inbred C57BLMice, KnockoutProto-Oncogene Proteins c-bcl-2Proto-Oncogene Proteins c-bcl-6Receptor, Notch1Receptors, Antigen, T-Cell, alpha-betaRecombination, GeneticBcl2 protein, mouseCD4 AntigensCD8 AntigensInterleukin-7interleukin-7, mouseNotch1 protein, mouseProto-Oncogene Proteins c-bcl-2Proto-Oncogene Proteins c-bcl-6Receptor, Notch1Receptors, Antigen, T-Cell, alpha-beta

Identifiers

PMID25729925
PMCPMC4368453
OpenAlexW2062121402

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.