Evidence map›Paper›PMID 25729643›Full record

ArticleGenomics data2015

Genomic analysis to define molecular basis of aggressiveness in a mouse model of oral cancer.

Varun Chalivendra, Krishna Latha Kanchi, Michael D Onken, Ashley E Winkler, Elaine Mardis, Ravindra Uppaluri

Open access · goldAbstract read
In one paragraph

Article in Genomics data, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.3field-weighted citation impact, top 41% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 11 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Varun ChalivendraDepartment of Otolaryngology and The Genome Institute, Washington University in Saint Louis School of Medicine, Department of Otolaryngology.
Krishna Latha KanchiDepartment of Otolaryngology and The Genome Institute, Washington University in Saint Louis School of Medicine, Department of Otolaryngology.
Michael D OnkenDepartment of Otolaryngology and The Genome Institute, Washington University in Saint Louis School of Medicine, Department of Otolaryngology.
Ashley E WinklerDepartment of Otolaryngology and The Genome Institute, Washington University in Saint Louis School of Medicine, Department of Otolaryngology.
Elaine MardisDepartment of Otolaryngology and The Genome Institute, Washington University in Saint Louis School of Medicine, Department of Otolaryngology.
Ravindra UppaluriDepartment of Otolaryngology and The Genome Institute, Washington University in Saint Louis School of Medicine, Department of Otolaryngology.
Washington University in St. Louis · US

Funding

Large Scale Genome SequencingU54HG003079 · NHGRI · WASHINGTON UNIVERSITY · PI DUTCHER, SUSAN K · 2004 to 2016
$445.7M
Washington University Center for Cellular ImagingP30CA091842 · NCI · WASHINGTON UNIVERSITY · PI TIMOTHY J. EBERLEIN · 2001 to 2026
$128.0M
Washington University Institute of Clinical and Translational SciencesUL1TR000448 · NCATS · WASHINGTON UNIVERSITY · PI EVANOFF, BRADLEY A · 2012 to 2016
$41.4M
Sensory Function CoreP30DC004665 · NIDCD · WASHINGTON UNIVERSITY · PI FADDIS, BRIAN T · 2001 to 2015
$8.0M
Molecular Mechanisms in Actin Assembly &Cell MotilityR01GM038542 · NIGMS · WASHINGTON UNIVERSITY · PI COOPER, JOHN A · 1989 to 2013
$7.4M
GENOMIC INSIGHTS AND THERAPEUTIC TARGETING OF ORAL CANCER TUMOR INITIATING CELLSR01DE024403 · NIDCR · WASHINGTON UNIVERSITY · PI UPPALURI, RAVINDRA · 2014 to 2018
$1.9M
NCATS NIH HHS UL1 TR000448NCI NIH HHS P30 CA091842NHGRI NIH HHS U54 HG003079NIDCD NIH HHS P30 DC004665NIDCR NIH HHS R01 DE024403NIGMS NIH HHS R01 GM038542
6 · The paper itself

Abstract

To investigate the molecular basis underlying aggressive behavior in oral squamous cell carcinoma (OSCC), our laboratory developed a carcinogen-induced mouse oral cancer (MOC) cell line model that encompasses the growth and metastasis spectrum of its human counterpart. We performed next-generation sequencing (NGS) and gene expression microarray profiles to explore the genomic and transcriptional backgrounds of the differential MOC line phenotypes, as well as, the cross-species relevance of the model. Here we describe the comparative analysis of NGS (www.ncbi.nlm.nih.gov/biosample?LinkName=bioproject_biosample_all&from_uid=247825) and expression microarray (www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE50041) data from the MOC lines and corresponding human data, as described in our recent publication [1].

Identifiers

PMID25729643
PMCPMC4340082
OpenAlexW1992708028

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.