Evidence map›Paper›PMID 25727256›Full record

ArticleEnvironmental microbiology2015

Regulation of plasmid-encoded isoprene metabolism in Rhodococcus, a representative of an important link in the global isoprene cycle.

Andrew T Crombie, Myriam El Khawand, Virgil A Rhodius, Kevin A Fengler, Michael C Miller, Gregg M Whited, Terry J McGenity, J Colin Murrell

Abstract read
In one paragraph

Article in Environmental microbiology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed.

  1. Article
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  3. Aerobic catabolism of isobutylene byApplied and environmental microbiology · 2026
    Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. Analysis of Essential Isoprene Metabolic Pathway Proteins inApplied and environmental microbiology · 2023
    Article
  13. Article
  14. Purification and Characterization of the Isoprene Monooxygenase fromApplied and environmental microbiology · 2022
    Article
  15. Article
  16. Characterization of the GlutathioneMicrobiology spectrum · 2021
    Article
  17. Article
  18. Synthetic Biology Approaches to Hydrocarbon Biosensors: A Review.Frontiers in bioengineering and biotechnology · 2021
    Review
  19. Microorganisms · 2020
    Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Andrew T CrombieUniversity of East Anglia, Norwich Research Park, Norwich, UK.
Myriam El KhawandUniversity of East Anglia, Norwich Research Park, Norwich, UK.
Virgil A RhodiusDuPont Industrial Biosciences, 925 Page Mill Road, Palo Alto, CA, 94304, USA.
Kevin A FenglerDuPont Pioneer, 7200 NW 62nd Avenue, Johnston, IA, 50131, USA.
Michael C MillerDuPont Industrial Biosciences, 925 Page Mill Road, Palo Alto, CA, 94304, USA.
Gregg M WhitedDuPont Industrial Biosciences, 925 Page Mill Road, Palo Alto, CA, 94304, USA.
Terry J McGenityUniversity of Essex, Wivenhoe Park, Colchester, UK.
J Colin MurrellUniversity of East Anglia, Norwich Research Park, Norwich, UK.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Emissions of biogenic volatile organic compounds (VOCs) form an important part of the global carbon cycle, comprising a significant proportion of net ecosystem productivity. They impact atmospheric chemistry and contribute directly and indirectly to greenhouse gases. Isoprene, emitted largely from plants, comprises one third of total VOCs, yet in contrast to methane, which is released in similar quantities, we know little of its biodegradation. Here, we report the genome of an isoprene degrading isolate, Rhodococcus sp. AD45, and, using mutagenesis shows that a plasmid-encoded soluble di-iron centre isoprene monooxygenase (IsoMO) is essential for isoprene metabolism. Using RNA sequencing (RNAseq) to analyse cells exposed to isoprene or epoxyisoprene in a substrate-switch time-course experiment, we show that transcripts from 22 contiguous genes, including those encoding IsoMO, were highly upregulated, becoming among the most abundant in the cell and comprising over 25% of the entire transcriptome. Analysis of gene transcription in the wild type and an IsoMO-disrupted mutant strain showed that epoxyisoprene, or a subsequent product of isoprene metabolism, rather than isoprene itself, was the inducing molecule. We provide a foundation of molecular data for future research on the environmental biological consumption of this important, climate-active compound.

Indexed as

Base SequenceButadienesCarbon CycleClimateEcosystemGene Expression ProfilingGenome, BacterialHemiterpenesMolecular Sequence DataPentanesPlantsPlasmidsRhodococcusRNA, BacterialSequence Analysis, RNAVolatile Organic CompoundsButadienesHemiterpenesisoprenePentanesRNA, BacterialVolatile Organic Compounds

Identifiers

PMID25727256
PMCPMC4676930

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.