Evidence map›Paper›PMID 25726926›Full record

ArticleBiotechnology and bioengineering2015

Robust kinetics of an RNA virus: Transcription rates are set by genome levels.

Collin Timm, Ankur Gupta, John Yin

Abstract read
In one paragraph

Article in Biotechnology and bioengineering, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.8field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 15 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Microbiome in human cancers.Access microbiology · 2021
    Review
  5. Article
  6. Article
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Collin TimmDepartment of Chemical and Biological Engineering, Systems Biology Theme, Wisconsin Institute for Discovery, University of Wisconsin-Madison, Madison, 53706, Wisconsin.
Ankur GuptaDepartment of Chemical and Biological Engineering, Systems Biology Theme, Wisconsin Institute for Discovery, University of Wisconsin-Madison, Madison, 53706, Wisconsin.
John YinDepartment of Chemical and Biological Engineering, Systems Biology Theme, Wisconsin Institute for Discovery, University of Wisconsin-Madison, Madison, 53706, Wisconsin. john.yin@wisc.edu.
University of Wisconsin–Madison · USWisconsin Institutes for Discovery · US

Funding

Research Training for Computation and Informatics in Biology and MedicineT15LM007359 · NLM · UNIVERSITY OF WISCONSIN-MADISON · PI Mark W. Craven, Colin Noel Dewey · 2002 to 2026
$22.6M
Evolution of Virus-Host InteractionsR01AI091646 · NIAID · UNIVERSITY OF WISCONSIN-MADISON · PI YIN, JOHN · 2011 to 2015
$2.0M
NIAID NIH HHS R01 AI091646NIAID NIH HHS R01-AI091646NLM NIH HHS 5T15LM007359NLM NIH HHS T15 LM007359
6 · The paper itself

Abstract

In order to persist in nature, RNA viruses have evolved strategies to grow in diverse host environments. To better understand how such strategies might work, we used qRT-PCR to measure viral RNA species during cellular infections by a model RNA virus, vesicular stomatitis virus (VSV). Absolute levels of the VSV major transcript and genome were measured for infections in BHK and PC3 cells, across different multiplicities of infection (MOI 1, 10, 100), in the absence or presence of protein synthesis, as well as in cells in an interferon-activated anti-viral state. While viral genome replication was delayed in more resistant host cells, kinetic modeling of these data revealed a simple linear relationship between the mRNA production rate and genome levels under all tested conditions. These results indicate that while viral transcription and genome replication both depend on the availability of the viral RNA-dependent RNA polymerase and host cellular resources, transcription proceeds without apparent limits on these resources.

Indexed as

Genome, ViralTranscription, GeneticVirus ReplicationAnimalsCell LineHumansReal-Time Polymerase Chain ReactionRNA, ViralVesiculovirusRNA, Viraldifferential equationskineticsreplicationtranscriptionvesicular stomatitis virus

Identifiers

PMID25726926
PMCPMC5653219
OpenAlexW2099626939

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.