Evidence map›Paper›PMID 25726471›Full record

ArticleMethods in enzymology2015

Computational and experimental studies of reassociating RNA/DNA hybrids containing split functionalities.

Kirill A Afonin, Eckart Bindewald, Maria Kireeva, Bruce A Shapiro

Abstract read
In one paragraph

Article in Methods in enzymology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
  2. Review
  3. Review
  4. Review
  5. Article
  6. Cellular Delivery of RNA Nanoparticles.ACS combinatorial science · 2016
    Review
  7. Article
  8. Article
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Kirill A AfoninBasic Research Laboratory, Center for Cancer Research, National Cancer Institute, Frederick, Maryland, USA.
Eckart BindewaldBasic Science Program, Leidos Biomedical Research Inc., National Cancer Institute, National Institutes of Health, Frederick, Maryland, USA.
Maria KireevaGene Regulation and Chromosome Biology Laboratory, Center for Cancer Research, NCI, National Cancer Institute, Frederick, Maryland, USA.
Bruce A ShapiroBasic Research Laboratory, Center for Cancer Research, National Cancer Institute, Frederick, Maryland, USA. Electronic address: shapirbr@mail.nih.gov.

Funding

Computational RNA NanodesignZIABC011061 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI SHAPIRO, BRUCE · 2009 to 2021
$12.3M
CCR NIH HHS HHSN261200800001CIntramural NIH HHS ZIA BC011061NCI NIH HHS HHSN261200800001E
6 · The paper itself

Abstract

Recently, we developed a novel technique based on RNA/DNA hybrid reassociation that allows conditional activation of different split functionalities inside diseased cells and in vivo. We further expanded this idea to permit simultaneous activation of multiple different functions in a fully controllable fashion. In this chapter, we discuss some novel computational approaches and experimental techniques aimed at the characterization, design, and production of reassociating RNA/DNA hybrids containing split functionalities. We also briefly describe several experimental techniques that can be used to test these hybrids in vitro and in vivo.

Indexed as

AlgorithmsBase SequenceComputational BiologyDNAEnzymesGene SilencingMolecular Sequence DataNucleic Acid ConformationProgramming LanguagesRNARNA, Small InterferingThermodynamicsDNAEnzymesRNARNA, Small InterferingRNA/DNA hybridssiRNA deliverySpecific gene silencingSplit functionalitiesThermodynamic of RNA/DNA hybrids reassociation

Identifiers

PMID25726471
PMCPMC6319920

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.