Evidence map›Paper›PMID 25725301›Full record

ArticleEnvironmental research2015

Transcriptional profiling and biological pathway analysis of human equivalence PCB exposure in vitro: indicator of disease and disorder development in humans.

Somiranjan Ghosh, Partha S Mitra, Christopher A Loffredo, Tomas Trnovec, Lubica Murinova, Eva Sovcikova, Svetlana Ghimbovschi, Shizhu Zang, Eric P Hoffman, Sisir K Dutta

Open access · greenAbstract read
In one paragraph

Article in Environmental research, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.9field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 21 citations in OpenAlex.

  1. Trial
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Review
  8. Article
  9. Review
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 2 countries.

Somiranjan GhoshMolecular Genetics Laboratory, Department of Biology, Howard University, Washington, DC 20059, USA. Electronic address: sghosh@howard.edu.
Partha S MitraMolecular Genetics Laboratory, Department of Biology, Howard University, Washington, DC 20059, USA.
Christopher A LoffredoDepartment of Oncology & Department of Biostatistics, Georgetown University, Washington, DC 20057, USA.
Tomas TrnovecDepartment of Environmental Medicine, Slovak Medical University, Bratislava, Slovak Republic.
Lubica MurinovaDepartment of Environmental Medicine, Slovak Medical University, Bratislava, Slovak Republic.
Eva SovcikovaDepartment of Environmental Medicine, Slovak Medical University, Bratislava, Slovak Republic.
Svetlana GhimbovschiCenter for Genetic Medicine, Children's National Medical Center, Washington, DC 20010, USA.
Shizhu ZangMolecular Genetics Laboratory, Department of Biology, Howard University, Washington, DC 20059, USA.
Eric P HoffmanCenter for Genetic Medicine, Children's National Medical Center, Washington, DC 20010, USA.
Sisir K DuttaMolecular Genetics Laboratory, Department of Biology, Howard University, Washington, DC 20059, USA. Electronic address: sdutta@howard.edu.
Howard University · USSlovak Medical University · SKChildren's National · USGeorgetown University · US

Funding

PROTEOMICS CORE FACILITYG12MD007597 · NIMHD · HOWARD UNIVERSITY · PI SOUTHERLAND, WILLIAM M. · 2012 to 2018
$14.8M
Early Childhood Development and PCB Exposures in Slovak*R01CA096525 · NCI · UNIVERSITY OF CALIFORNIA DAVIS · PI HERTZ-PICCIOTTO, IRVA · 2001 to 2005
$2.3M
Early Disease Biomarkers of PCB-exposed Human PopulationU01ES016127 · NIEHS · HOWARD UNIVERSITY · PI DUTTA, SISIR K · 2007 to 2010
$1.7M
NCI NIH HHS R01 CA096525NCI NIH HHS R01-CA96525NIEHS NIH HHS 1UO1ES016127-01NIEHS NIH HHS U01 ES016127NIMHD NIH HHS 5G12MD007597-25NIMHD NIH HHS G12 MD007597
6 · The paper itself

Abstract

BACKGROUND AND

aimsOur earlier gene-expression studies with a Slovak PCBs-exposed population have revealed possible disease and disorder development in accordance with epidemiological studies. The present investigation aimed to develop an in vitro model system that can provide an indication of disrupted biological pathways associated with developing future diseases, well in advance of the clinical manifestations that may take years to appear in the actual human exposure scenario.

methodsWe used human Primary Blood Mononuclear Cells (PBMC) and exposed them to a mixture of human equivalence levels of PCBs (PCB-118, -138, -153, -170, -180) as found in the PCBs-exposed Slovak population. The microarray studies of global gene expression were conducted on the Affymetrix platform using Human Genome U133 Plus 2.0 Array along with Ingenuity Pathway Analysis (IPA) to associate the affected genes with their mechanistic pathways. High-throughput qRT-PCR Taqman Low Density Array (TLDA) was done to further validate the selected 6 differentially expressed genes of our interest, viz., ARNT, CYP2D6, LEPR, LRP12, RRAD, TP53, with a small population validation sample (n=71).

resultsOverall, we revealed a discreet gene expression profile in the experimental model that resembled the diseases and disorders observed in PCBs-exposed population studies. The disease pathways included endocrine system disorders, genetic disorders, metabolic diseases, developmental disorders, and cancers, strongly consistent with the evidence from epidemiological studies.

interpretationThese gene finger prints could lead to the identification of populations and subgroups at high risk for disease, and can pose as early disease biomarkers well ahead of time, before the actual disease becomes visible.

Indexed as

Environmental ExposureAdolescentBiomarkersChildDistrict of ColumbiaEnvironmental PollutantsFemaleGene Expression RegulationHumansLeukocytes, MononuclearMaleMolecular Sequence DataOligonucleotide Array Sequence AnalysisPolychlorinated BiphenylsReal-Time Polymerase Chain ReactionSequence Analysis, DNABiomarkersEnvironmental PollutantsPolychlorinated BiphenylsBiomarkersDisease and disordersGene expressionHuman PBMCPathway analysisPCBsTaqman Low-Density Array (TLDA)

Identifiers

PMID25725301
PMCPMC4739739
OpenAlexW2093859907

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.