Evidence map›Paper›PMID 25725064›Full record

ArticleDevelopment (Cambridge, England)2015

Evolutionarily conserved regulation of hypocretin neuron specification by Lhx9.

Justin Liu, Florian T Merkle, Avni V Gandhi, James A Gagnon, Ian G Woods, Cindy N Chiu, Tomomi Shimogori, Alexander F Schier, David A Prober

Open access · bronzeAbstract read
In one paragraph

Article in Development (Cambridge, England), 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 46 papers.

0numbers the graph read from it
0cells of the map it votes in
46citing papers in PubMed
4.1field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

46 citing papers in PubMed, 63 citations in OpenAlex.

  1. Enteroendocrine cells wire the gut-brain vagal axis.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  2. Article
  3. Article
  4. Single-Cell Profiling Uncovers Evolutionary Divergence of Hypocretin/Orexin Neuronal Subpopulations.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2024
    Article
  5. Evo-devo applied to sleep research: an approach whose time has come.Sleep advances : a journal of the Sleep Research Society · 2024
    Review
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  10. Review
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  14. Review
  15. Review
  16. Article
  17. Article
  18. Biology open · 2021
    Article
  19. Heterogeneity of Hypocretin/Orexin Neurons.Frontiers of neurology and neuroscience · 2021
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Justin LiuDivision of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA 91125, USA.
Florian T MerkleDepartments of Molecular and Cellular Biology, and Stem Cell and Regenerative Biology, Harvard University, Cambridge, MA 02138, USA Harvard Stem Cell Institute, Harvard University, Cambridge, MA 02138, USA.
Avni V GandhiDivision of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA 91125, USA.
James A GagnonDepartments of Molecular and Cellular Biology, and Stem Cell and Regenerative Biology, Harvard University, Cambridge, MA 02138, USA.
Ian G WoodsDepartments of Molecular and Cellular Biology, and Stem Cell and Regenerative Biology, Harvard University, Cambridge, MA 02138, USA.
Cindy N ChiuDivision of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA 91125, USA.
Tomomi ShimogoriBrain Science Institute, RIKEN, Saitama 351-0198, Japan.
Alexander F SchierDepartments of Molecular and Cellular Biology, and Stem Cell and Regenerative Biology, Harvard University, Cambridge, MA 02138, USA Harvard Stem Cell Institute, Harvard University, Cambridge, MA 02138, USA Division of Sleep Medicine, Harvard University, Cambridge, MA 02115, USA.
David A ProberDivision of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA 91125, USA dprober@caltech.edu.
California Institute of Technology · USHarvard University · USRIKEN Center for Brain Science · JP

Funding

Neuropeptidergic Regulation of Zebrafish SleepR01NS070911 · NINDS · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI PROBER, DAVID AARON · 2011 to 2020
$3.5M
Genetics of Sleep in ZebrafishR01HL109525 · NHLBI · HARVARD UNIVERSITY · PI SCHIER, ALEXANDER F · 2011 to 2015
$2.1M
Genetic and neuronal regulation of sleep by adenosine in zebrafishR01DA031367 · NIDA · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI PROBER, DAVID AARON · 2011 to 2015
$1.7M
Genetic Analysis of Sleep Disorders in ZebrafishR00NS060996 · NINDS · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI PROBER, DAVID AARON · 2009 to 2011
$742k
Generation of Hypocretin Neurons from Narcoleptic PatientsR21NS071598 · NINDS · HARVARD UNIVERSITY · PI SCHIER, ALEXANDER F · 2010 to 2011
$457k
Cellular models of hypocretin neuron loss in narcolepsyK99NS083713 · NINDS · HARVARD UNIVERSITY · PI MERKLE, FLORIAN TOBIAS · 2013 to 2014
$178k
Genetic Analysis of Sleep Disorders in ZebrafishK99NS060996 · NINDS · HARVARD UNIVERSITY · PI PROBER, DAVID AARON · 2008 to 2009
$95k
The Genetic Basis of Hypocretin Neuronal Specification.F31NS077844 · NINDS · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI LIU, JUSTIN · 2012 to 2014
$93k
NHLBI NIH HHS R01 HL109525NHLBI NIH HHS R01HL109525NIDA NIH HHS R01 DA031367NIDA NIH HHS R01DA031367NINDS NIH HHS 1R21NS071598NINDS NIH HHS 5K99NS083713NINDS NIH HHS F31 NS077844NINDS NIH HHS F31NS77844NINDS NIH HHS K99 NS060996NINDS NIH HHS K99 NS083713NINDS NIH HHS R00 NS060996NINDS NIH HHS R00NS060996NINDS NIH HHS R01 NS070911NINDS NIH HHS R01NS070911NINDS NIH HHS R21 NS071598NINDS NIH HHS R21NS071598
6 · The paper itself

Abstract

Loss of neurons that express the neuropeptide hypocretin (Hcrt) has been implicated in narcolepsy, a debilitating disorder characterized by excessive daytime sleepiness and cataplexy. Cell replacement therapy, using Hcrt-expressing neurons generated in vitro, is a potentially useful therapeutic approach, but factors sufficient to specify Hcrt neurons are unknown. Using zebrafish as a high-throughput system to screen for factors that can specify Hcrt neurons in vivo, we identified the LIM homeobox transcription factor Lhx9 as necessary and sufficient to specify Hcrt neurons. We found that Lhx9 can directly induce hcrt expression and we identified two potential Lhx9 binding sites in the zebrafish hcrt promoter. Akin to its function in zebrafish, we found that Lhx9 is sufficient to specify Hcrt-expressing neurons in the developing mouse hypothalamus. Our results elucidate an evolutionarily conserved role for Lhx9 in Hcrt neuron specification that improves our understanding of Hcrt neuron development.

Indexed as

AnimalsAnimals, Genetically ModifiedCell SeparationCloning, MolecularDNA PrimersElectrophoretic Mobility Shift AssayGene Expression RegulationGene Knockdown TechniquesGreen Fluorescent ProteinsHigh-Throughput Screening AssaysHypothalamusImmunohistochemistryIntracellular Signaling Peptides and ProteinsMiceMicroarray AnalysisNeuronsDNA Primersenhanced green fluorescent proteinGreen Fluorescent ProteinsIntracellular Signaling Peptides and ProteinsLhx9 protein, zebrafishNeuropeptidesOrexinsTranscription FactorsZebrafish ProteinsHypocretinLhx9Zebrafish

Identifiers

PMID25725064
PMCPMC4360184
OpenAlexW2089678845

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.