Evidence map›Paper›PMID 25725058›Full record

ArticleDatabase : the journal of biological databases and curation2015

FR database 1.0: a resource focused on fruit development and ripening.

Junyang Yue, Xiaojing Ma, Rongjun Ban, Qianli Huang, Wenjie Wang, Jia Liu, Yongsheng Liu

Abstract readDataset
PubMed Full text at PMC Publisher
In one paragraph

Article in Database : the journal of biological databases and curation, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Kiwifruit Information Resource (KIR): a comparative platform for kiwifruit genomics.Database : the journal of biological databases and curation · 2015
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Junyang YueSchool of Biotechnology and Food Engineering, Hefei University of Technology, Hefei 230009, China, School of Medical Engineering, Hefei University of Technology, Hefei 230009, China, School of Information Science and Technology, University of Science and Technology of China, Hefei 230009, China, Ministry of Education Key Laboratory for Bio-resource and Eco-environment, College of Life Science and State Key Laboratory of Hydraulics and Mountain River Engineering, Sichuan University, Chengdu 610064, China.
Xiaojing MaSchool of Biotechnology and Food Engineering, Hefei University of Technology, Hefei 230009, China, School of Medical Engineering, Hefei University of Technology, Hefei 230009, China, School of Information Science and Technology, University of Science and Technology of China, Hefei 230009, China, Ministry of Education Key Laboratory for Bio-resource and Eco-environment, College of Life Science and State Key Laboratory of Hydraulics and Mountain River Engineering, Sichuan University, Chengdu 610064, China.
Rongjun BanSchool of Biotechnology and Food Engineering, Hefei University of Technology, Hefei 230009, China, School of Medical Engineering, Hefei University of Technology, Hefei 230009, China, School of Information Science and Technology, University of Science and Technology of China, Hefei 230009, China, Ministry of Education Key Laboratory for Bio-resource and Eco-environment, College of Life Science and State Key Laboratory of Hydraulics and Mountain River Engineering, Sichuan University, Chengdu 610064, China.
Qianli HuangSchool of Biotechnology and Food Engineering, Hefei University of Technology, Hefei 230009, China, School of Medical Engineering, Hefei University of Technology, Hefei 230009, China, School of Information Science and Technology, University of Science and Technology of China, Hefei 230009, China, Ministry of Education Key Laboratory for Bio-resource and Eco-environment, College of Life Science and State Key Laboratory of Hydraulics and Mountain River Engineering, Sichuan University, Chengdu 610064, China.
Wenjie WangSchool of Biotechnology and Food Engineering, Hefei University of Technology, Hefei 230009, China, School of Medical Engineering, Hefei University of Technology, Hefei 230009, China, School of Information Science and Technology, University of Science and Technology of China, Hefei 230009, China, Ministry of Education Key Laboratory for Bio-resource and Eco-environment, College of Life Science and State Key Laboratory of Hydraulics and Mountain River Engineering, Sichuan University, Chengdu 610064, China.
Jia LiuSchool of Biotechnology and Food Engineering, Hefei University of Technology, Hefei 230009, China, School of Medical Engineering, Hefei University of Technology, Hefei 230009, China, School of Information Science and Technology, University of Science and Technology of China, Hefei 230009, China, Ministry of Education Key Laboratory for Bio-resource and Eco-environment, College of Life Science and State Key Laboratory of Hydraulics and Mountain River Engineering, Sichuan University, Chengdu 610064, China.
Yongsheng LiuSchool of Biotechnology and Food Engineering, Hefei University of Technology, Hefei 230009, China, School of Medical Engineering, Hefei University of Technology, Hefei 230009, China, School of Information Science and Technology, University of Science and Technology of China, Hefei 230009, China, Ministry of Education Key Laboratory for Bio-resource and Eco-environment, College of Life Science and State Key Laboratory of Hydraulics and Mountain River Engineering, Sichuan University, Chengdu 610064, China School of Biotechnology and Food Engineering, Hefei University of Technology, Hefei 230009, China, School of Medical Engineering, Hefei University of Technology, Hefei 230009, China, School of Information Science and Technology, University of Science and Technology of China, Hefei 230009, China, Ministry of Education Key Laboratory for Bio-resource and Eco-environment, College of Life Science and State Key Laboratory of Hydraulics and Mountain River Engineering, Sichuan University, Chengdu 610064, China School of Biotechnology and Food Engineering, Hefei University of Technology, Hefei 230009, China, School of Medical Engineering, Hefei University of Technology, Hefei 230009, China, School of Information Science and Technology, University of Science and Technology of China, Hefei 230009, China, Ministry of Education Key Laboratory for Bio-resource and Eco-environment, College of Life Science and State Key Laboratory of Hydraulics and Mountain River Engineering, Sichuan University, Chengdu 610064, China liuyongsheng1122@hfut.edu.cn.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Fruits form unique growing period in the life cycle of higher plants. They provide essential nutrients and have beneficial effects on human health. Characterizing the genes involved in fruit development and ripening is fundamental to understanding the biological process and improving horticultural crops. Although, numerous genes that have been characterized are participated in regulating fruit development and ripening at different stages, no dedicated bioinformatic resource for fruit development and ripening is available. In this study, we have developed such a database, FR database 1.0, using manual curation from 38 423 articles published before 1 April 2014, and integrating protein interactomes and several transcriptome datasets. It provides detailed information for 904 genes derived from 53 organisms reported to participate in fleshy fruit development and ripening. Genes from climacteric and non-climacteric fruits are also annotated, with several interesting Gene Ontology (GO) terms being enriched for these two gene sets and seven ethylene-related GO terms found only in the climacteric fruit group. Furthermore, protein-protein interaction analysis by integrating information from FR database presents the possible function network that affects fleshy fruit size formation. Collectively, FR database will be a valuable platform for comprehensive understanding and future experiments in fruit biology. Database URL: http://www.fruitech.org/

Indexed as

Databases, GeneticFruitPlantsGene Expression Regulation, PlantGenes, PlantHumansTranscriptome

Identifiers

PMID25725058
PMCPMC4343184

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.