Evidence map›Paper›PMID 25724890›Full record

ArticleTranslational research : the journal of laboratory and clinical medicine2015

MicroRNA biogenesis and cellular proliferation.

Divya Lenkala, Eric R Gamazon, Bonnie LaCroix, Hae Kyung Im, R Stephanie Huang

Abstract read
In one paragraph

Article in Translational research : the journal of laboratory and clinical medicine, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed, 2 pooled it
1.5field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 2 syntheses or guidelines pooled it, 20 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Article
  4. Article
  5. Article
  6. Article
  7. Association of variants in microRNA with Parkinson's disease in Chinese Han population.Neurological sciences : official journal of the Italian Neurological Society and of the Italian Society of Clinical Neurophysiology · 2018
    Article
  8. Article
  9. Article
  10. Review
  11. Use of miRNAs as biomarkers in sepsis.Analytical cellular pathology (Amsterdam) · 2015
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Divya LenkalaSection of Hematology/Oncology, Department of Medicine, University of Chicago, Chicago, Ill.
Eric R GamazonSection of Genetic Medicine, Department of Medicine, University of Chicago, Chicago, Ill; Division of Genetic Medicine, Vanderbilt University, Nashville, Tenn.
Bonnie LaCroixSection of Hematology/Oncology, Department of Medicine, University of Chicago, Chicago, Ill.
Hae Kyung ImSection of Genetic Medicine, Department of Medicine, University of Chicago, Chicago, Ill.
R Stephanie HuangSection of Hematology/Oncology, Department of Medicine, University of Chicago, Chicago, Ill. Electronic address: rhuang@medicine.bsd.uchicago.edu.
University of Chicago · US

Funding

VIRAL ONCOLOGY CORE FACILITYP30CA014599 · NCI · UNIVERSITY OF CHICAGO · PI CHIEN-MIN KAO · 1985 to 2026
$122.1M
Whole GenomeU01GM061393 · NIGMS · UNIVERSITY OF CHICAGO · PI COX, NANCY J · 2000 to 2014
$39.0M
TRANSLATIONAL RESEARCH UNIVERSITY OF CHICAGO: CLINICAL TRIALSUL1RR024999 · NCRR · UNIVERSITY OF CHICAGO · PI SOLWAY, JULIAN · 2007 to 2011
$25.3M
Pilot and Feasibility ProgramP30DK020595 · NIDDK · UNIVERSITY OF CHICAGO · PI Raghavendra G Mirmira · 2013 to 2026
$20.9M
Re-Engineering Translational Research at the University of ChicagoUL1TR000430 · NCATS · UNIVERSITY OF CHICAGO · PI SOLWAY, JULIAN · 2012 to 2016
$20.2M
Variation in Hormone and xenobiotic metabolizing enzyme genes and breast cancerP50CA125183 · NCI · UNIVERSITY OF CHICAGO · PI COX, NANCY · 2006 to 2010
$11.3M
Developing an Oncology Workforce for the 21st Century - Renewal 01K12CA139160 · NCI · UNIVERSITY OF CHICAGO · PI OLOPADE, OLUFUNMILAYO F., SMITH, SONALI · 2010 to 2024
$10.6M
Genome-wide interrogation of genetic signatures for glucocorticoid sensitivityK08GM089941 · NIGMS · UNIVERSITY OF CHICAGO · PI HUANG, RONG STEPHANIE · 2010 to 2014
$498k
Incorporation of microRNA expression in pharmacogenetic prediction modelsR21CA139278 · NCI · UNIVERSITY OF CHICAGO · PI DOLAN, MARY EILEEN, HUANG, RONG STEPHANIE · 2009 to 2010
$378k
NCATS NIH HHS UL1 TR000430NCI NIH HHS CA125183NCI NIH HHS K12 CA139160NCI NIH HHS K12CA139160NCI NIH HHS P30 CA014599NCI NIH HHS P30 CA14599NCI NIH HHS P50 CA125183NCI NIH HHS R21 CA139278NCRR NIH HHS UL1 RR024999NCRR NIH HHS UL1RR024999NIDDK NIH HHS P30 DK020595NIGMS NIH HHS K08 GM089941NIGMS NIH HHS K08GM089941NIGMS NIH HHS U01 GM061393NIGMS NIH HHS UO1GM61393
6 · The paper itself

Abstract

Given the fundamental roles of microRNAs (miRNAs) in physiological, developmental, and pathologic processes, we hypothesized that genes involved in miRNA biogenesis contribute to human complex traits. For 13 such genes, we evaluated the relationship between transcription and 2 classes of complex traits, namely cellular growth and sensitivity to various chemotherapeutic agents in a set of lymphoblastoid cell lines. We found a highly significant correlation between argonaute RNA-induced silencing complex catalytic component 2 (AGO2) expression and cellular growth rate (Bonferroni-adjusted P < 0.05), and report additional miRNA biogenesis genes with suggestive associations with either cellular growth rate or chemotherapeutic sensitivity. AGO2 expression was found to be correlated with multiple drug sensitivity phenotypes. Furthermore, small interfering RNA knockdown of AGO2 resulted in cellular growth inhibition in an ovarian cancer cell line (OVCAR-3), supporting the role of this miRNA biogenesis gene in cell proliferation in cancer cells. Expression quantitative trait loci mapping indicated that genetic variation (in the form of both single-nucleotide polymorphisms and copy number variations) that may regulate the expression of AGO2 can have downstream effects on cellular growth-dependent complex phenotypes.

Indexed as

AnimalsArgonaute ProteinsCattleCell Line, TumorCell ProliferationFemaleGene Expression Regulation, NeoplasticGenetic VariationHumansMicroRNAsReproducibility of ResultsAGO2 protein, humanArgonaute ProteinsMicroRNAs

Identifiers

PMID25724890
PMCPMC4509805
OpenAlexW2044515129

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.