Evidence map›Paper›PMID 25724657›Full record

ArticleDevelopmental biology2015

Xenopus pax6 mutants affect eye development and other organ systems, and have phenotypic similarities to human aniridia patients.

Takuya Nakayama, Marilyn Fisher, Keisuke Nakajima, Akinleye O Odeleye, Keith B Zimmerman, Margaret B Fish, Yoshio Yaoita, Jena L Chojnowski, James D Lauderdale, Peter A Netland and 1 more

Abstract read
In one paragraph

Article in Developmental biology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
3.3field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 73 citations in OpenAlex.

  1. Article
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  5. Molecular Mechanism of Metformin Regulating the Regeneration of PlanarianInternational journal of molecular sciences · 2025
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  6. Itpka depletion implicates defects in anterior neural development ofFrontiers in cell and developmental biology · 2025
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  7. Systematic review:Frontiers in medicine · 2025
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  9. Temporal Transcriptomic Profiling of the DevelopingbioRxiv : the preprint server for biology · 2024
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  10. Review
  11. Article
  12. Reduction of lens size in PAX6-related aniridia.Experimental eye research · 2024
    Article
  13. Ancestral role of Pax6 in chordate brain regionalization.Frontiers in cell and developmental biology · 2024
    Article
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  15. Prdm15 acts upstream of Wnt4 signaling in anterior neural development ofFrontiers in cell and developmental biology · 2024
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  20. The Ribosomal Protein L5 Functions DuringFrontiers in cell and developmental biology · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 2 countries.

Takuya NakayamaDepartment of Biology, University of Virginia, Charlottesville, VA 22904, USA.
Marilyn FisherDepartment of Biology, University of Virginia, Charlottesville, VA 22904, USA.
Keisuke NakajimaDivision of Embryology and Genetics, Institute for Amphibian Biology, Hiroshima University, Higashihiroshima 739-8526, Japan.
Akinleye O OdeleyeDepartment of Biology, University of Virginia, Charlottesville, VA 22904, USA.
Keith B ZimmermanDepartment of Biology, University of Virginia, Charlottesville, VA 22904, USA.
Margaret B FishDepartment of Biology, University of Virginia, Charlottesville, VA 22904, USA.
Yoshio YaoitaDivision of Embryology and Genetics, Institute for Amphibian Biology, Hiroshima University, Higashihiroshima 739-8526, Japan.
Jena L ChojnowskiDepartment of Cellular Biology, University of Georgia, Athens, GA, 30602, USA.
James D LauderdaleDepartment of Cellular Biology, University of Georgia, Athens, GA, 30602, USA.
Peter A NetlandDepartment of Ophthalmology, University of Virginia School of Medicine, Charlottesville, VA 22908, USA.
Robert M GraingerDepartment of Biology, University of Virginia, Charlottesville, VA 22904, USA; Department of Ophthalmology, University of Virginia School of Medicine, Charlottesville, VA 22908, USA. Electronic address: rmg9p@virginia.edu.
University of Virginia · USHiroshima University · JPUniversity of Georgia · US

Funding

Resource CoreP40OD010997 · OD · MARINE BIOLOGICAL LABORATORY · PI Marko E Horb · 2012 to 2026
$13.1M
Genetic Control of Early Retinal DevelopmentR01EY017400 · NEI · UNIVERSITY OF VIRGINIA · PI GRAINGER, ROBERT M · 2006 to 2010
$1.8M
Genomic survey of cis-regulatory element function by high-throughput transgenesisR01EY018000 · NEI · UNIVERSITY OF VIRGINIA · PI GRAINGER, ROBERT M · 2009 to 2012
$1.3M
Mechanisms of Embryonic Lens DeterminationR01EY022954 · NEI · UNIVERSITY OF VIRGINIA · PI GRAINGER, ROBERT M · 2013 to 2015
$1.2M
NEI NIH HHS EY018000NEI NIH HHS EY022954NEI NIH HHS R01 EY017400NEI NIH HHS R01EY017400NEI NIH HHS R01 EY018000NEI NIH HHS R01 EY022954NIH HHS P40 OD010997
6 · The paper itself

Abstract

Mutations in the Pax6 gene cause ocular defects in both vertebrate and invertebrate animal species, and the disease aniridia in humans. Despite extensive experimentation on this gene in multiple species, including humans, we still do not understand the earliest effects on development mediated by this gene. This prompted us to develop pax6 mutant lines in Xenopus tropicalis taking advantage of the utility of the Xenopus system for examining early development and in addition to establish a model for studying the human disease aniridia in an accessible lower vertebrate. We have generated mutants in pax6 by using Transcription Activator-Like Effector Nuclease (TALEN) constructs for gene editing in X. tropicalis. Embryos with putative null mutations show severe eye abnormalities and changes in brain development, as assessed by changes in morphology and gene expression. One gene that we found is downregulated very early in development in these pax6 mutants is myc, a gene involved in pluripotency and progenitor cell maintenance and likely a mediator of some key pax6 functions in the embryo. Changes in gene expression in the developing brain and pancreas reflect other important functions of pax6 during development. In mutations with partial loss of pax6 function eye development is initially relatively normal but froglets show an underdeveloped iris, similar to the classic phenotype (aniridia) seen in human patients with PAX6 mutations. Other eye abnormalities observed in these froglets, including cataracts and corneal defects, are also common in human aniridia. The frog model thus allows us to examine the earliest deficits in eye formation as a result of pax6 lesions, and provides a useful model for understanding the developmental basis for the aniridia phenotype seen in humans.

Indexed as

MutationAnimalsAniridiaBase SequenceCodon, NonsenseDisease Models, AnimalDNAExonsEyeEye ProteinsGene TargetingHomeodomain ProteinsHumansMolecular Sequence DataMutagenesisPaired Box Transcription FactorsCodon, NonsenseDNAEye ProteinsHomeodomain ProteinsPaired Box Transcription FactorsPAX6 protein, humanPAX6 Transcription FactorRepressor ProteinsLensNeural patterningRetinaTranscription Activator-Like Effector Nuclease (TALEN)Xenopus tropicalis

Identifiers

PMID25724657
PMCPMC4549229
OpenAlexW1971860633

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.