Evidence map›Paper›PMID 25724652›Full record

ArticleThe Journal of biological chemistry2015

Identification of a novel HIV-1 inhibitor targeting Vif-dependent degradation of human APOBEC3G protein.

Erez Pery, Ann Sheehy, N Miranda Nebane, Andrew Jay Brazier, Vikas Misra, Kottampatty S Rajendran, Sara J Buhrlage, Marie K Mankowski, Lynn Rasmussen, E Lucile White and 2 more

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
2.9field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 41 citations in OpenAlex.

  1. Review
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  4. A high-throughput response to the SARS-CoV-2 pandemic.SLAS discovery : advancing life sciences R & D · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 1 country.

Erez PeryFrom the Departments of Cancer Immunology and AIDS and Departments of Pathology and.
Ann SheehyDepartment of Biology, College of the Holy Cross, Worcester, Massachusetts 01610.
N Miranda NebaneSouthern Research Institute High Throughput Screening Center, Birmingham, Alabama 35205, and.
Andrew Jay BrazierFrom the Departments of Cancer Immunology and AIDS and.
Vikas MisraFrom the Departments of Cancer Immunology and AIDS and.
Kottampatty S RajendranFrom the Departments of Cancer Immunology and AIDS and Departments of Pathology and.
Sara J BuhrlageCancer Biology, Dana Farber Cancer Institute and.
Marie K MankowskiSouthern Research Institute, Department of Infectious Disease Research, Frederick, Maryland 21701.
Lynn RasmussenSouthern Research Institute High Throughput Screening Center, Birmingham, Alabama 35205, and.
E Lucile WhiteSouthern Research Institute High Throughput Screening Center, Birmingham, Alabama 35205, and.
Roger G PtakSouthern Research Institute, Department of Infectious Disease Research, Frederick, Maryland 21701.
Dana GabuzdaFrom the Departments of Cancer Immunology and AIDS and Neurology (Microbiology), Harvard Medical School, Boston, Massachusetts 02115, dana_gabuzda@dfci.harvard.edu.
Harvard University · USSouthern Research Institute · USCollege of the Holy Cross · USDana-Farber Cancer Institute · US

Funding

VectorP30CA006516 · NCI · DANA-FARBER CANCER INSTITUTE · PI A. Heather Eliassen · 1985 to 2026
$330.6M
The impact of HIV viral diversity and cellular immunity on HIV pathogenesisP30AI060354 · NIAID · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI ROBERT A. PARKER · 2004 to 2026
$94.4M
Novel Assays to Identify HIV Vif InhibitorsR21AI067032 · NIAID · DANA-FARBER CANCER INSTITUTE · PI GABUZDA, DANA H. · 2005 to 2006
$466k
Small molecule inhibitors of HIV-1 VifR21AI087458 · NIAID · DANA-FARBER CANCER INST · PI GABUZDA, DANA H. · 2010 to 2011
$458k
NCI NIH HHS P30 CA006516NCI NIH HHS P30 CA06516NIAID NIH HHS AI67032NIAID NIH HHS AI87458NIAID NIH HHS HHSN272200700041CNIAID NIH HHS HHSN272200700042CNIAID NIH HHS P30 AI060354NIAID NIH HHS R21 AI067032NIAID NIH HHS R21 AI087458PHS HHS HHSN272200700041CPHS HHS HHSN272200700042C
6 · The paper itself

Abstract

APOBEC3G (A3G) is a cellular cytidine deaminase that restricts HIV-1 replication by inducing G-to-A hypermutation in viral DNA and by deamination-independent mechanisms. HIV-1 Vif binds to A3G, resulting in its degradation via the 26 S proteasome. Therefore, this interaction represents a potential therapeutic target. To identify compounds that inhibit interaction between A3G and HIV-1 Vif in a high throughput format, we developed a homogeneous time-resolved fluorescence resonance energy transfer assay. A 307,520 compound library from the NIH Molecular Libraries Small Molecule Repository was screened. Secondary screens to evaluate dose-response performance and off-target effects, cell-based assays to identify compounds that attenuate Vif-dependent degradation of A3G, and assays testing antiviral activity in peripheral blood mononuclear cells and T cells were employed. One compound, N.41, showed potent antiviral activity in A3G(+) but not in A3G(-) T cells and had an IC50 as low as 8.4 μM and a TC50 of >100 μM when tested against HIV-1Ba-L replication in peripheral blood mononuclear cells. N.41 inhibited the Vif-A3G interaction and increased cellular A3G levels and incorporation of A3G into virions, thereby attenuating virus infectivity in a Vif-dependent manner. N.41 activity was also species- and Vif-dependent. Preliminary structure-activity relationship studies suggest that a hydroxyl moiety located at a phenylamino group is critical for N.41 anti-HIV activity and identified N.41 analogs with better potency (IC50 as low as 4.2 μM). These findings identify a new lead compound that attenuates HIV replication by liberating A3G from Vif regulation and increasing its innate antiviral activity.

Indexed as

Anti-HIV AgentsAPOBEC-3G DeaminaseBiological AssayCell LineCytidine DeaminaseFluorescence Resonance Energy TransferGene Expression RegulationHEK293 CellsHIV-1Host-Pathogen InteractionsHumansLeukocytes, MononuclearPrimary Cell CultureProteasome Endopeptidase ComplexProteolysisSignal TransductionAnti-HIV AgentsAPOBEC-3G DeaminaseAPOBEC3G protein, humanATP dependent 26S proteaseCytidine DeaminaseProteasome Endopeptidase ComplexSmall Molecule Librariesvif Gene Products, Human Immunodeficiency Virusvif protein, Human immunodeficiency virus 1Antiviral AgentCytidine DeaminaseHigh Throughput Screening (HTS)Human Immunodeficiency Virus (HIV)Viral ProteinVirology

Identifiers

PMID25724652
PMCPMC4400358
OpenAlexW2169912921

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.