Evidence map›Paper›PMID 25724434›Full record

ArticleJournal of virological methods2015

Production, purification, and capsid stability of rhinovirus C types.

Theodor F Griggs, Yury A Bochkov, Kazuyuki Nakagome, Ann C Palmenberg, James E Gern

Abstract read
In one paragraph

Article in Journal of virological methods, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.7field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 20 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Rhinovirus C15 Attenuates Relaxation and cAMP Production in Human Airways and Smooth Muscle.American journal of respiratory cell and molecular biology · 2023
    Article
  6. Article
  7. Article
  8. Enhanced Neutralizing Antibody Responses to Rhinovirus C and Age-Dependent Patterns of Infection.American journal of respiratory and critical care medicine · 2021
    Article
  9. Rhinovirus C15 Induces Airway Hyperresponsiveness via Calcium Mobilization in Airway Smooth Muscle.American journal of respiratory cell and molecular biology · 2020
    Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Atomic structure of a rhinovirus C, a virus species linked to severe childhood asthma.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
  16. Virus/Allergen Interaction in Asthma Exacerbation.Annals of the American Thoracic Society · 2015
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Theodor F GriggsDepartment of Pediatrics, School of Medicine and Public Health, University of Wisconsin, Madison, United States; Cellular & Molecular Pathology Graduate Program, University of Wisconsin, Madison, United States; Medical Scientist Training Program, University of Wisconsin, Madison, United States. Electronic address: tgriggs@wisc.edu.
Yury A BochkovDepartment of Pediatrics, School of Medicine and Public Health, University of Wisconsin, Madison, United States.
Kazuyuki NakagomeDepartment of Pediatrics, School of Medicine and Public Health, University of Wisconsin, Madison, United States.
Ann C PalmenbergInstitute for Molecular Virology, University of Wisconsin, Madison, United States.
James E GernDepartment of Pediatrics, School of Medicine and Public Health, University of Wisconsin, Madison, United States; Cellular & Molecular Pathology Graduate Program, University of Wisconsin, Madison, United States.
University of Wisconsin–Madison · US

Funding

Virus-Bacterial Interactions and Exacerba of AsthmaP01HL070831 · NHLBI · UNIVERSITY OF WISCONSIN-MADISON · PI JACKSON, DANIEL J, LEMANSKE, ROBERT F · 2002 to 2017
$31.3M
Wisconsin Infant Study Cohort (WISC)U19AI104317 · NIAID · UNIVERSITY OF WISCONSIN-MADISON · PI James E. Gern, CHRISTINE Marie SEROOGY · 2013 to 2026
$22.5M
INTEGRATED TRAINING FOR PHYSICIAN-SCIENTISTST32GM008692 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI BURKARD, MARK E · 1998 to 2020
$10.3M
Graduate Training In Cellular And Molecular Pathogenesis Of Human DiseasesT32GM081061 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI FABRY, ZSUZSANNA · 2010 to 2019
$1.8M
NHLBI NIH HHS P01 HL070831NIAID NIH HHS 1U19AI104317-01NIAID NIH HHS U19 AI104317NIGMS NIH HHS 5T32GM081061-05NIGMS NIH HHS T32 GM008692NIGMS NIH HHS T32GM008692NIGMS NIH HHS T32 GM081061
6 · The paper itself

Abstract

The rhinovirus C (RV-C) were discovered in 2006 and these agents are an important cause of respiratory morbidity. Little is known about their biology. RV-C15 (C15) can be produced by transfection of recombinant viral RNA into cells and subsequent purification over a 30% sucrose cushion, even though yields and infectivity of other RV-C genotypes with this protocol are low. The goal of this study was to determine whether poor RV-C yields were due to capsid instability, and moreover, to develop a robust protocol suitable for the purification of many RV-C types. Capsid stability assays indicated that virions of RV-C41 (refractory to purification) have similar tolerance for osmotic and temperature stress as RV-A16 (purified readily), although C41 is more sensitive to low pH. Modification to the purification protocol by removing detergent increased the yield of RV-C. Addition of nonfat dry milk to the sucrose cushion increased the virus yield but sacrificed purity of the viral suspension. Analysis of virus distribution following centrifugation indicated that the majority of detectable viral RNA (vRNA) was found in pellets refractory to resuspension. Reduction of the centrifugal force with commiserate increase in spin-time improved the recovery of RV-C for both C41 and C2. Transfection of primary lung fibroblasts (WisL cells) followed by the modified purification protocol further improved yields of infectious C41 and C2. Described herein is a higher yield purification protocol suitable for RV-C types refractory to the standard purification procedure. The findings suggest that aggregation-adhesion problems rather than capsid instability influence RV-C yield during purification.

Indexed as

CapsidDetergentsHydrogen-Ion ConcentrationMicrobial ViabilityOsmotic PressureRhinovirusTemperatureVirologyDetergentsCentrifugationConcentrationPurificationRhinovirus CStability

Identifiers

PMID25724434
PMCPMC4389691
OpenAlexW2023866307

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.