Evidence map›Paper›PMID 25724343›Full record

ArticleCurrent microbiology2015

Homocitrate synthase expression and lysine content in fruiting body of different developmental stages in Flammulina velutipes.

Fang Liu, Wei Wang, Bing-Zhi Chen, Bao-Gui Xie

Abstract read
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Article in Current microbiology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.6field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 19 citations in OpenAlex.

  1. Article
  2. Article
  3. Molecular Evolution of Lysine Biosynthesis in Agaricomycetes.Journal of fungi (Basel, Switzerland) · 2021
    Article
  4. Article
  5. Article
  6. A WD40 Protein Encoding GeneFrontiers in microbiology · 2020
    Article
  7. Article
  8. Comparative Transcriptomics ofInternational journal of molecular sciences · 2019
    Article
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Fang LiuMycological Research Center, Fujian Agriculture and Forestry University, Fuzhou, 350002, Fujian, People's Republic of China, fjliufang@163.com.
Wei Wang
Bing-Zhi Chen
Bao-Gui Xie
Fujian Agriculture and Forestry University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Homocitrate synthase (EC 2.3.3.14) regulates the first step of fungal lysine biosynthesis. The gene encoding homocitrate synthase was identified in whole genomic sequencing of Flammulina velutipes and contains seven introns. The homocitrate synthase gene of F. velutipes strain W23 (Fvhcs) is 1780 bp in length and encodes a 464 amino acid protein with a predicted molecular weight 50.7 kDa. Phylogenetic analysis of Fvhcs and other homocitrate synthase proteins from diverse fungi produced a topology congruent with the current best estimate of organismal phylogeny. Analysis of protein domains by InterProScan and a motif search found that Fvhcs gene encodes homocitrate synthase protein conserved across Agaricomycotina. In addition, we sequenced the transcriptome of different developmental stages and structures of the fruiting body to analyze the expression levels of the Fvhcs gene. The data showed a correlation between Fvhcs gene expression and lysine values in different developmental stages and structures of F. velutipes.

Indexed as

Gene Expression Regulation, FungalCluster AnalysisDNA, FungalFlammulinaGene Expression ProfilingGenome, FungalIntronsLysineMolecular WeightOxo-Acid-LyasesPhylogenySequence Analysis, DNASequence Homology, Amino AcidDNA, Fungalhomocitrate synthaseLysineOxo-Acid-Lyases

Identifiers

PMID25724343
OpenAlexW1967244533

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.