Evidence map›Paper›PMID 25724006›Full record

ArticleCell cycle (Georgetown, Tex.)2015

De-regulated expression of the BRG1 chromatin remodeling factor in bone marrow mesenchymal stromal cells induces senescence associated with the silencing of NANOG and changes in the levels of chromatin proteins.

Tiziana Squillaro, Valeria Severino, Nicola Alessio, Annarita Farina, Giovanni Di Bernardo, Marilena Cipollaro, Gianfranco Peluso, Angela Chambery, Umberto Galderisi

Open access · bronzeAbstract read
In one paragraph

Article in Cell cycle (Georgetown, Tex.), 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 33 citations in OpenAlex.

  1. Article
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  10. The Mechanism of Stem Cell Aging.Stem cell reviews and reports · 2022
    Review
  11. Cyclic DNA remethylation following active demethylation at euchromatic regions in mouse embryonic stem cells.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2021
    Article
  12. Review
  13. Review
  14. Article
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  18. Article
  19. Epigenetic regulation in cell senescence.Journal of molecular medicine (Berlin, Germany) · 2017
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 6 institutions in 3 countries.

Tiziana Squillaroa Department of Experimental Medicine; Biotechnology and Molecular Biology Section ; Second University of Naples ; Naples , Italy.
Valeria Severino
Nicola Alessio
Annarita Farina
Giovanni Di Bernardo
Marilena Cipollaro
Gianfranco Peluso
Angela Chambery
Umberto Galderisi
University of Campania "Luigi Vanvitelli" · ITInstitute of Biosciences and Bioresources · ITGeneva College · USIstituti di Ricovero e Cura a Carattere Scientifico · ITUniversity of Geneva · CHUniversity of Naples Federico II · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Stem cells have a peculiar chromatin architecture that contributes to their unique properties, including uncommitted status, multi/pluripotency and self-renewal. We analyzed the effect of the de-regulation of the SWI/SNF chromatin remodeling complex in mesenchymal stromal cells (MSC) through the silencing and up-regulation of BRG1, which is the ATPase subunit of the complex. The altered expression of BRG1 promoted the senescence of MSC with suppression of the NANOG transcription, which is part of the transcriptional circuitry governing stem cell functions. To gain insight on the way NANOG was silenced, we evaluated how the de-regulated BRG1 expression affect the binding of activators and repressors on the NANOG promoter. We found 4 E2F binding motifs on NANOG promoter, which can be occupied by RB1 and RB2/P130. These are members of the retinoblastoma gene family. In MSC with a silenced BRG1, the relative binding of the 2 retinoblastoma proteins increased, and this was associated with the recruitment of DNMT1. This induced the methylation of CpG on the NANOG promoter. Opposingly, when a high level of BRG1 was present, the same E2F binding motifs were docking sites for BRG1, which induced chromatin compaction without CpG methylation but with increased histone deacetylation, associated with the presence of HDAC1 on E2F binding sites. Besides the sharp regulation of the NANOG expression, we evidenced, through proteomic analysis, that the de-regulation of the SWI/SNF function affected the expression of histones and other nuclear proteins involved in "nuclear architecture," suggesting that BRG1 may act as global regulator of gene expression.

Indexed as

Cellular SenescenceBinding SitesBone Marrow CellsCells, CulturedChromatinChromatin Assembly and DisassemblyCrk-Associated Substrate ProteinDNA HelicasesDNA MethylationE2F Transcription FactorsGene Expression RegulationHistone Deacetylase 1HistonesHomeodomain ProteinsHumansMesenchymal Stem CellsBCAR1 protein, humanChromatinCrk-Associated Substrate ProteinDNA HelicasesE2F Transcription FactorsHDAC1 protein, humanHistone Deacetylase 1HistonesHomeodomain ProteinsNanog Homeobox ProteinNANOG protein, humanNuclear ProteinsRetinoblastoma ProteinRNA, Small InterferingSMARCA4 protein, humanTranscription FactorsTumor Suppressor Protein p53mesenchymal stem cellsproteomeretinoblastomasenescence

Identifiers

PMID25724006
PMCPMC4614278
OpenAlexW2082097313

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.